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6 protocols using 15n2 uracil

1

Isotopic Standards for Mass Spectrometry

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HPLC grade acetonitrile and methanol, LC-MS water and 98% formic acid were obtained from Sigma-Aldrich (St. Louis, MO). A mixture of 14 stable isotopic chemicals were used as internal standards [18 (link)], including [13C6]-D-glucose, [15N]-indole, [2-15N]-L-lysine dihydrochloride, [13C5]-L-glutamic acid, [13C7]-benzoic acid, [3,4-13C2]-cholesterol, [15N]-L-tyrosine, [trimethyl-13C3]-caffeine, [15N2]-uracil, [3,3-13C2]-cystine, [1,2-13C2]-palmitic acid, [15N,13C5]-L-methionine, [15N]-choline chloride and 2’-deoxyguanosine-15N2,13C10-5’-monophosphate from Cambridge Isotope Laboratories, Inc (Andover, PA).
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2

Comprehensive Metabolite Quantification Protocol

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HPLC grade acetonitrile and methanol, LC-MS water and 98% formic acid were obtained from Sigma-Aldrich (St. Louis, MO). A mixture of 14 stable isotopic chemicals were used as an internal standard (Go et al. 2015 (link)) included [13C6]-D-glucose, [15N]-indole, [2-15N]-L-lysine dihydrochloride, [13C5]-L-glutamic acid, [13C7]-benzoic acid, [3,4-13C2]-cholesterol, [15N]-L-tyrosine, [trimethyl-13C3]-caffeine, [15N2]-uracil, [3,3-13C2]-cystine, [1,2-13C2]-palmitic acid, [15N,13C5]-L-methionine, [15N]-choline chloride and 2′-deoxyguanosine-15N132, C10-5′-monophosphate from Cambridge Isotope Laboratories, Inc (Andover, PA).
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3

Targeted Metabolomics Stable Isotope Profiling

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HPLC grade acetonitrile and methanol, LC-MS water and 98% formic acid were obtained from Sigma-Aldrich (St. Louis, MO). A mixture of 14 stable isotopic chemicals used as an internal standard [57 (link)] included [13C6]-D-glucose, [15N]-indole, [2-15N]-L-lysine dihydrochloride, [13C5]-L-glutamic acid, [13C7]-benzoic acid, [3,4-13C2]-cholesterol, [15N]-L-tyrosine, [trimethyl-13C3]-caffeine, [15N2]-uracil, [3,3-13C2]-cystine, [1,2-13C2]-palmitic acid, [15N,13C5]-L-methionine, [15N]-choline chloride and 2’-deoxyguanosine-15N2,13C10-5’-monophosphate from Cambridge Isotope Laboratories, Inc (Andover, PA).
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4

Stable Isotopic Internal Standards for LC-MS

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Unless otherwise stated, materials were purchased from Sigma‐Aldrich. A mixture of 11 stable isotopic chemicals used as an internal standard for LC–MS analysis included [13C6]‐d‐glucose, [15N]‐indole, [15N,13C5]‐l‐methionine, [2‐15N]‐l‐lysine dihydrochloride, [15N]‐choline chloride, [13C5]‐l‐glutamic acid, [13C7]‐benzoic acid, [15N]‐l‐tyrosine, [15N2]‐uracil, [3,3‐13C2]‐cystine and [trimethyl‐13C3]‐caffeine purchased from Cambridge Isotope Laboratories, Inc. PyC2‐Gly [(γEC)2G] standard was purchased from CPC Scientific. All metal standards were purchased from either RICCA Chemical Company or Inorganic Ventures.
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5

Stable Isotope Labeled Metabolite Quantification

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Internal standards included the following stable-isotope labeled compounds: [24-13C]-cholic acid, l-Arginine-15N4, Uracil-15N2, l-Tyrosine-13C9,15N, l-Phenylalanine-13C9, 15N, and Acetyl-d3-Carnitine purchased from Cambridge Isotope laboratories; linoleic acid-d11 and eicosapentaenoic acid-d5 purchased from Cayman Chemicals; and [trimethyl-13C3]-caffeine purchased from Milli-poreSigma. Acetonitrile and formic acid (Optima, Fisher Scientific) and isopropyl alcohol (Lichrosolv, MillioporeSigma) used for analysis were LC–MS grade. Water was prepared with an Ultrapure MilliQ system (18 MΩ, Millipore, USA). Purified human hemoglobin (MP Biomedicals), Human Serum Albumin (MilliporeSigma), and Sysmex Reagent Sulfolyser (Henry Schein, Melville, NY) were purchased for the Hb assays.
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6

Quantification of 5-FU, Uracil, and Tegafur

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The standards of 5-FU and uracil were purchased from Wako Pure Chemical Ind. Ltd. (Osaka, Japan), and the standard of tegafur was purchased from Tokyo Chemical Industry Co. Ltd. (Tokyo, Japan). The stable isotope-labeled internal standards (IS) for 5-FU and tegafur; 5-FU-13C,15N2 and tegafur-13C,15N2, respectively, were synthesized by Toronto Research Chemicals (Toronto, Canada) and that for uracil; uracil-15N2, was synthesized by Cambridge Isotope Laboratories Inc. (Andover, MA, USA). Ammonium formate used for preparing working solution was purchased from Wako Pure Chemical Ind. Ltd. (Osaka, Japan). All solvents (water, methanol, acetonitrile, ethyl acetate, and isopropyl alcohol) used in chromatography, mass spectrometry, liquid extraction, and sample preparation were of the highest analytical quality (HPLC or LC/MS grade).
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