The largest database of trusted experimental protocols

Imagescope viewer

Manufactured by Leica
Sourced in United States

The ImageScope viewer is a digital microscopy software application that enables the visualization and analysis of high-resolution digital images captured from microscopes. The software provides a user-friendly interface for viewing, navigating, and manipulating digital slide images.

Automatically generated - may contain errors

4 protocols using imagescope viewer

1

Histological Evaluation of Scar Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
At day 60 (2 months) and 180 (6 months) post-injury, three (3) full-thickness specimens (approximately 3 cm × 1 cm) were harvested from across the scar. Samples were then fixed in 10% neutral-buffered formalin (NBF), embedded in paraffin, sectioned (5 μm), and stained with hematoxylin and eosin (H&E), Masson Trichrome and Verhoeff–van Gieson (VVG) stain. Entire slides were then digitally scanned using the Aperio ScanScope AT2 slide scanner (Aperio Technologies, Vista, CA, USA). Slides were viewed and analyzed using the ImageScope viewer (Aperio Technologies).
+ Open protocol
+ Expand
2

Quantitative Image Analysis of Mast Cells and Plasma Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quantitative computer image analysis was performed according the manufacturer’s protocol. All slides were scanned at an absolute magnification of 200× (resolution of 0.25 μm/pixel) using a ScanScope AT2 scanner (Leica Microsystems, Wetzlar, Germany). The obtained digital images of the slides were analyzed using an ImageScope viewer (Version 11.2.0.780; Aperio Technologies, Inc., Vista, CA, USA). CD117+ mast cells and CD138+ plasma cells were manually counted in 30 random fields for each group (five random fields from each rat) with an area of 0.60 mm2 from the digital images of the slides. For the automatic computer analysis of cytokeratin MNF116 and desmin expression, a cytoplasmic v2 algorithm (version 11.2.0.780; Aperio Technologies, Inc.) was used. Using the software, individual stains were calibrated by analyzing sections and recording the average optical density values. The area of analysis was manually determined (Figure 2A,B). The percentage of cells with weak, medium, and strong positive immunostaining were determined for cytokeratin MNF116 (Figure 2C) and desmin (Figure 2D). The total number of cytokeratin MNF116- and desmin-positive cells was counted in 30 random fields for each group (five random fields from each rat), with an average area of 0.28 mm2 (for cytokeratin) and 0.12 mm2 (for desmin).
+ Open protocol
+ Expand
3

Quantifying ERα and PR Expression in Fallopian Tubes

Check if the same lab product or an alternative is used in the 5 most similar protocols
ERα- and PR-immunostained slides were scanned at a magnification of 400× (resolution of 0.25 μm/pixel) using the ScanScope AT2 scanner (Leica Microsystems, Wetzlar, Germany). The obtained digital images of the slides were analyzed using the ImageScope viewer (Version 11.2.0.780; Aperio Technologies, Vista, CA, USA). Immunoexpression of ERα and PR in the glandular epithelium and the stroma of the ampulla and isthmus of the fallopian tubes was expressed as a percentage of ERα- and PR-immunopositive cells using automatic computer analysis. For this assessment, a nuclear v9 algorithm (version 9.1; Aperio Technologies, Vista, CA, USA) was applied. Analyzed areas were manually determined. Using the algorithm, the percentage of cells with ERα-positive and PR-positive immunostaining was independently counted in 40 random fields in each group with an average area of 0.4 mm2.
+ Open protocol
+ Expand
4

DLBCL Tumor Microenvironment Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
For IHC staining, 4 μm slides of tissue microarrays from 341 DLBCL cases and antibodies listed in Supplemental Table 9 were used. Staining was performed on a Benchmark XT platform (Ventana). The protein expression of PRAME was recorded semiquantitatively; score 0: negative, score 1: weak positive, score 2: strong positive. Immunohistochemically stained slides for the T cell markers CD4, CD8, FOXP3, PD-1, GATA3, and T-bet as well as the macrophage markers CD68 and CD163 were scanned with an Aperio ScanScope XT at 20× original magnification. Image analysis was performed using the ImageScope viewer (v12.1.0; Aperio Technologies). The positive pixel count algorithm with an optimized color saturation threshold was then applied to tumor-containing areas, and any staining was considered positive. The number of positive pixels was divided by the total pixel count and multiplied by 100 to obtain the percentage of positive pixels. Representative images were taken using a Nikon Eclipse 80i microscope equipped with a Nikon DS-Ri1 camera and NIS Elements imaging software, D3.10.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!