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100 protocols using ve cadherin

1

Quantifying Soluble Ephrin-A1, VE-Cadherin, and E-Cadherin in Plasma

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Mouse ephrin-A1 (R&D Systems), VE-cadherin (Abcam), and E-cadherin (Abcam) ELISA kits were used to detect the presence of soluble ephrin-A1 ligand, VE-cadherin, and E-cadherin, respectively, in the plasma of mice. Mouse ephrin-A1 ELISA kits were also used to detect soluble ephrin-A1 present in MBMEC culture supernatants post-stimulation as described in detail in a previous section. Mice were euthanized with isoflurane and whole blood was collected into heparinized tubes and centrifuged at 1000g for 15 minutes at 4°C to isolate plasma. Plasma was diluted 1:10 for ELISA analysis of ephrin-A1 ligand, 1:800 for ELISA analysis of VE-cadherin, and 1:2000 for ELISA analysis of E-cadherin. Absorbance was measured at 450nm using a plate reader (Biotek) and plasma concentrations were determined using standard curves as per the manufacturer’s instructions. Human ephrin-A1 (Sino Biological) and human EphA2 (R&D Systems) ELISA kits were used to detect the presence of soluble ephrin-A1 ligand and soluble EphA2, respectively, in the plasma of humans and carried out according to the manufacturer’s instructions.
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2

Endothelial Barrier Function Assessment

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As important markers for endothelial barrier function, the distribution of the tight junction scaffolding protein ZO-1 and adherens junction protein VE-cadherin were observed (36 (link)). After relevant treatment, GEnCs were washed in PBS and fixed with 4% formaldehyde for 30 min. Next, the GEnCs were permeabilized with 0.5% Triton X-100, washed and blocked with 5% BSA for 1 h at room temperature. After incubation with primary antibodies (ZO-1, dilution 1/100, Life, Carlsbad, CA, USA; VE-cadherin, dilution 1/200, Abcam, Cambridge, MA, USA) at 4°C overnight and a thorough wash in PBS, the GEnCs were incubated with fluorescein isothiocyanate (FITC)-conjugated secondary antibodies (for the detection of ZO-1, dilution 1/200, Jackson ImmunoResearch, West Grove, PA, USA; for the detection of VE-cadherin, dilution 1/500, Abcam, Cambridge, MA, USA) at 37°C for 1 h. Eventually, the specimens were stained with 10 μg/ml 4',6-diamidino-2-phenylindole (DAPI) and mounted with Mowiol. The immunofluorescence staining was photographed by a fluorescence microscope (Nikon Eclipse 90i, Nikon Instruments Inc., Tokyo, Japan). At least 10 visual fields per slide of GEnCs at ×400 were observed blindly. Image J software (National Institutes of Health, Bethesda, MD, USA) was used to evaluate the immunofluorescence staining of ZO-1 and VE-cadherin. Positive signals were quantified as signal intensity.
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3

Lung Protein Quantification by Western Blot

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Protein levels of the lungs were measured by western blot. The frozen right lungs were mechanically disrupted and the total protein lysates were extracted using protein lysates (CST). Equal amounts of protein were separated by SDS/PAGE and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Bedford, MA, USA). Following blocking with 5% bovine serum albumin for 1h at room temperature, the membranes were incubated at 4 °C overnight with a primary antibody recognizing VE-cadherin (HuaAn, Hangzhou, China), β-catenin (HuaAn), phosphorylated-β-catenin (Thr 41/Ser 45) (HuaAn), Src (JF0947) (HuaAn), phosphorylated—Src (Y529) (Abcam, Cambridge, UK), gsk3β (HuaAn), phosphorylated-gsk3β (Y216 + Y279) (Abcam), PI3K (HuaAn) and β-actin (HuaAn). Then the membranes were incubated with secondary antibodies coupled to horseradish peroxidase at room temperature for 1 h and detected using a Tanon-4500 gel imaging system.
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4

Abdominal Aorta Endothelial Protein Expression

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The abdominal aorta was isolated, fixed in 4% PFA for 12 min, opened in the longitudinal direction, and stained for ICAM1 (Abcam), VCAM1 (Abcam), or VE-cadherin (Abcam) in combination with DAPI. En face sections were obtained on a Leica SP8 confocal microscope, and all the analyses were performed with Image J [15 (link)].
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5

TGF-β1 Signaling Pathway Investigation

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Human recombinant TGF‐β1 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against α‐SMA, VE‐cadherin, collagen I, collagen III, CD31, vWF and GAPDH were purchased from Abcam (Cambridge, MA, USA). Antibodies against phospho‐Smad 2 (Ser465/467), phosphor‐Smad 3 (Ser423/425), phospho‐Akt (Ser473), phospho‐mTOR (Ser2448), phospho‐p70S6K (Thr389), phospho‐Erk 1/2 (Thr202/Tyr204), phospho‐p38 MAPK (Thr180/Tyr182), phospho‐c‐Jun (Ser73), Smad 2, Smad 3, Akt, mTOR, p70S6K, Erk 1/2, p38 MAPK and c‐Jun, and selective inhibitors including SB431542, SB203580, UO126 and SP600125 were purchased from Cell Signaling Technology (Beverly, MA, USA). MK2206 was purchased from Selleckchem (Houston, TX, USA). Penicillin‐streptomycin and Roswell Park Memorial Institute (RPMI)‐1640 medium were purchased from Invitrogen (Life Technologies, Grand Island, NY, USA). Fetal bovine serum (FBS) was purchased from Gibco (Carlsbad, CA, USA).
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6

Immunoblotting Analysis of Lung Tissue Proteins

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The protein samples were obtained from lung tissues or MLVECs using RIPA lysis buffer containing proteinase inhibitor cocktail (Beyotime Institute of Biotechnology) and the protein concentration was measured using the BCA protein assay (Beyotime Institute of Biotechnology). Equal amounts of samples (40 μg) were resolved by electrophoresis using 8% SDS polyacrylamide gels and the proteins were subsequently transferred onto PVDF membranes (0.45 μm; EMD Millipore). Immunoblotting was performed using primary antibodies against MMP-9 (cat.no. ab38898; 1:1000; Abcam), VE-cadherin (cat.no. ab205336; 1:500; Abcam), ZO-1 (cat.no. 21773-1-AP; 1:1000; ProteinTech Group, Inc.), NF-κB p65 (cat.no. 3034S; 1:1000; Cell Signalling Technology, Inc.), phosphorylated (p)-NF-κB p65 (cat.no. 3033S; 1:1000; Cell Signalling Technology, Inc.), IκB-α (cat.no. 9242S; 1:1000; Cell Signalling Technology, Inc.), and β-actin (cat.no. A1978; 1:1000; Sigma-Aldrich; Merck KGaA), followed by incubation with horseradish peroxidase-linked secondary antibodies (HRP-Goat Anti-Mouse cat.no. SA00001-1; 1:5000; HRP-Goat Anti-Rabbit; SA00001-2; 1:5000; ProteinTech Group, Inc.).
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7

Endothelial Protection against Homocysteine

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DL-Homocysteine (Hcy), DL –Propargylglycine (PG) and NaHS were purchased from Sigma Aldrich (St. Louis, MO). Hydrogen peroxide (H2O2), and Tween-20 were obtained from Fischer Scientific (Fair Lawn, New Jersey). Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), penicillin, and streptomycin were procured from American Type Culture Collection (ATCC). Polyclonal antibody to DNMT1, DNMT3a, DNMT3b, NMDA-R1, NOX4, SOD2, LC3, LC3-I/II, CSE, Atg3/7 p62, eNOS, VE-cadherin, CD31 and Endothelin 1 were procured from ABCAM (Cambridge, MA, USA) and Santa Cruz Biotechnology (Santa Cruz, CA). 4′, 6-diamidino-2-phenylindole (DAPI), ATP assay Kit, JC-1 and 2′, 7′-dichlorodihydrofluoresceindiacetate (H2DCF-DA), MitoSOX Red and MitoTracker green FM were purchased from Invitrogen (Eugene, OR). The NMDA-R siRNA (cat no. SI00172977) and control siRNA (cat no. 1027310) was procured from Qiagen (Qiagen, Valencia, CA, USA).
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8

Isolation and Characterization of Prdx6-null Pulmonary Microvascular Endothelial Cells

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Pulmonary microvascular endothelial cells (PMVEC) were isolated from the lungs of Prdx6-null mice as described previously [28] (link). The endothelial phenotype was routinely confirmed by fluorescence microscopy to determine cellular uptake of acetylated low-density lipoprotein labeled with 1,1′–dioctadecyl-3,3,3′,3′–tetramethylindocarbocyanine perchlorate (DiI-AcLDL) and by immunostaining with mouse monoclonal antibodies for PECAM-1 (Santa Cruz Biotech, Santa Cruz, CA) and vascular endothelial cadherin (VE-cadherin) (Abcam, Cambridge, MA) [28] (link). Prdx6 null PMVEC were infected by adding lentivirus prepared using primers as described previously to cells in growth media containing polybrene (∼8 μg/ml) [16] (link), [19] (link). Cells were studied at 72–96 h post-transfection when expression of infected proteins was maximal. Empty HMD lentiviral transfer plasmid was used as a negative control.
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9

Immunofluorescent Staining of Cell-Cell Junctions

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Cells were fixed in 4 % paraformaldehyde (PFA) for 10 min, followed by permeabilization with 0.05% Triton-X for another 15 min. Non-specific binding was prevented by blocking with a 5% bovine serum albumin (BSA) solution in PBS for 1 h. After these steps, the samples were incubated with primary antibodies against vinculin (1:500; Abcam, MA, USA), VE-cadherin (1:500; Abcam, MA, USA), or fibronectin (1:500; Sigma, MO, USA) for 2 h at room temperature, followed by incubation with the appropriate secondary antibodies (against rabbit IgG (H+L) conjugated to Alexa Fluor 488 or mouse IgG conjugated to Alexa Fluor 633; 1:200; Life Technologies, CA, USA) and Alexa Fluor 546 Phalloidin (1:200; Life Technologies, CA, USA) for 1 h at room temperature. To stain for nuclei, samples were incubated with 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI; Invitrogen, CA, USA) solution with a working concentration of at least 300 nM for 5 minutes. The samples were washed at least three times with 0.5% BSA solution in between steps. After the last staining step, all samples were washed with PBS for at least three times and then mounted on a glass slide with Prolong Gold anti-fade agent (Life Technologies, CA, USA).
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10

Extracellular Vesicle Protein Analysis

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Antibodies against flotillin-1 (1 : 1000, Abcam), CD63 (1 : 500, Proteintech), GAPDH (1 : 500, Santa), VE-cadherin (1 : 1000, Abcam), CD9 (1 : 2000, CST), ALIX (1 : 1000, Abcam), TSG101 (1 : 1000, Abcam), and GM130 (1 : 1000, Abcam) were used in western blot as previously described [11 (link)].
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