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35 protocols using ly6c fitc

1

Immunophenotyping of Tumor-Infiltrating Cells

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SM1 tumors harvested from mice were digested with collagenase (Sigma-Aldrich). Splenocytes and cells obtained from digested SM1 tumors, were stained with antibodies to CD3 BV605 (clone 17A2), Ly6C FITC (Clone AL-21), PD-L1/CD274 PE (Clone MIH5) (Becton Dickinson Biosciences), CD8a BV421 (Clone 53-6.7) (Biolegend), Ly-6G (Gr1) PerCP 5.5 (clone RB6-8C5), CD11b APC (clone M1/70), F4/80 Pacific blue/eFluor450 (clone BM8), CD25 APC (PC61.5), CD4 FITC (RM4-5) (eBioscience), and analyzed with LSR-II or FACSCalibur flow cytometers (Becton Dickinson Biosciences), followed by analysis using Flow-Jo software (FLOWJO, LLC) as previously described (30 (link)). Intracellular staining of interferon gamma was done as previously described (30 (link)). Intracellular staining of Foxp3 PE (FJK-16s) (eBioscience) was done according to manufacture's recommendations.
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2

Characterization of Tumor-Infiltrating Immune Cells

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SM1 tumors and spleens were harvested from mice. Tumors were further digested with collagenase (Sigma-Aldrich). Splenocytes and cells obtained from digested SM1 tumors, were stained with Ab to CD3 BV605 (clone 17A2), Ly6C FITC (Clone AL-21), PD-L1/CD274 PE (Clone MIH5) (Becton Dickinson Biosciences, San Jose, CA), CD8a BV421 (Clone 53-6.7) (Biolegend, San Diego, CA), Ly-6G (Gr1) PerCP 5.5 (clone RB6-8C5), CD11b APC (clone M1/70), F4/80 Pacific blue/eFluor450 (clone BM8), CD25 APC (PC61.5), CD4+ FITC (RM4-5) (eBioscience, San Diego, CA), and analyzed with LSR-II or FACSCalibur flow cytometers (Becton Dickinson Biosciences), followed by analysis using Flow-Jo software (FLOWJO, LLC, Ashland, OR). Intracellular staining of Foxp3 PE (FJK-16s) (eBioscience) was done according to manufacturer's recommendations. After applying a gating strategy for the selection of the target population and exclusion of dead cells in tumors and spleens (Fig. S1A), the different immune cell populations were analyzed. Cells were analyzed with a LSR-II or FACSCalibur flow cytometers (BD Biosciences), followed by Flow-Jo software (Tree-Star, Ashland, OR) analysis as previously described.49 (link)
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3

Isolation and Analysis of Mouse Immune Cells

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The tissues were cut and homogenized in a homogenizing apparatus and 10 ml sterile saline was added to prepare a cell suspension that was filtered through a 200-micron nylon mesh. The cell suspension was centrifuged at 1500 × g for 5 min, and then the supernatant was discarded. The precipitate was resuspended by adding red blood cell lysate and was allowed to stand at room temperature for 5 min. After neutralization of the cell suspension with PBS, centrifugation was performed at 1500 × g for another 5 min, and then the supernatant was discarded. The cell suspension was then washed and resuspended once again with PBS and then incubated with the rat anti-mouse CD4-FITC, F4/80-PE, Ly6G and LY-6C-FITC (BD Biosciences, United States) for 30 min on ice. Finally, the cells were analyzed by flow cytometry (BD Biosciences, United States).
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4

FACS Analysis of Myeloid-Derived Suppressor Cells

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Cells were stained with specific antibodies or control isotypes using conventional protocols. The following anti-mouse antibodies were used for FACS analysis of MDSCs: CD11b/PECy5, Gr1/PE, Gr1/APC, CD62L/FITC, F4/80/FITC, CD11c/PE, and MHC CI OVA peptide/Biotin from eBiosciences (San Diego, CA); as well as CD124/PE, CD40/FITC, CD86/FITC, IA-IE/FITC, Ly6C/FITC and Ly6G/PE that were purchased from BD Biosciences (San Jose, CA). Lymphocytes characterization was performed with the next specific antibodies: CD8/PE and CD8/Biotin, CD69/PECy5, CD62L/FITC, CD247/PE, CD4/PE, CD4/PECy5, CD25/PECy5, Foxp3/Biotin, IFN-γ/FITC, IL-4/PE and IL-17/PE, all from eBiosciences. FITC-conjugated Streptavidin was purchased also from eBiosciences. In all cases, cells were previously incubated with anti-mouse FcγR 2.4G2 ascites (HB-197; ATCC) to reduce the non-specific binding. For intracellular staining, cells were fixed and permeabilized, according to the manufacturer’s protocol, with either Foxp3 Staining Buffer Set or IC Fixation and 10X Permeabilization Buffers from eBiosciences. Cells were acquired using both FACScan (BD Biosciences) and Gallios (Beckman Coulter, Miami, FL) flow cytometers and analyzed with Kaluza 1.2 (Beckman Coulter) and FlowJo 5.7.2 (Tree Star Inc., USA) softwares.
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5

Comprehensive Immune Profiling Workflow

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ELISA kits for murine IL-6 was from R&D Systems (Minneapolis, MN). Fluorescein-conjugated mAbs including anti-CD3-PE-Cy7, CD4-PE-Cy5, CD8-PE, CD8-FITC, CD11b-APC, Ly6G-PE, Ly6C-FITC, CXCR2-Percp-Cy5.5, CD45-BV510, PD1-PE, PDL1-PE, LAG3-PE, CTLA4-PE, IFNγ-PE and isotype antibodies were purchased from BD biosciences. TIM3-PE was from Miltenyi Biotec (Bergisch-Gladbach, Germany). Antibody against STAT3 (79D7, 4904S), p-STAT3 (Tyr705, 9131S), ZEB1 (3396P), ZO-1(5406P), Snail(3879P), N-Cadherin(4061P) were obtained from Cell Signaling Technology (Beverly, MA, USA) and antibody against Actin was from Santa Cruz. IL6 inhibitor (501109) and IFN-γ inhibitor (505827) was from Biolegend. Luciferin substrate (K9909PE) for in vivo image was purchased from PerkinElmer Inc (Hopkinton, MA, USA). HE staining kit was from Beyotime Biotechnology. ShRNA for ZEB1 (TG513177) was purchased from OriGene.
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6

Flow Cytometry Neutrophil Phagocytosis

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To measure phagocytosis of neutrophils by flow cytometry, wound cells were stained with Ly6C-FITC and F4/80-APC to identify macrophages and with Ly6G-V450 (clone 1A8; BD Bioscience) to exclude neutrophils. Cells were fixed and permeabilized as described above, then intracellularly stained with Ly6G-PE (clone 1A8; BD Biosciences). Doublets were excluded from analysis and isotype controls for surface and intracellular Ly6G antibodies were used to ensure specificity of intracellular Ly6G staining.
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7

Immunophenotyping of Mouse Cardiac and Spleen Cells

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The LV and spleen of No‐MI (d0), MI‐d1, MI‐d3, and MI‐d56 male and female mice were taken; and mononuclear cells from both were isolated using methods as previously described24 After adjusting for ≈1 to 2 million cells/stain, the cells were suspended in 100 μL of FC block and allowed to incubate for 10 minutes on ice. A stain cocktail containing fluorophore‐labeled monoclonal antibodies in 2× concentration was added on ice for 30 minutes. The stain cocktail contained CD45‐PE‐CY7 (BD Biosciences, San Jose, CA), CD11b‐APC, F4/80‐PERCP (Molecular Probes, Eugene, OR), Ly6C‐FITC (BD Biosciences), Ly6G–Pacific blue (e‐Bioscience), and LIVE/DEAD Fixable Blue Dead Cell Stain Kit and was used to determine viability and cell type (Figure S1A; gating strategy).12, 25
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8

Immunophenotyping of Mouse Blood Cells

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The heparinized blood from each animal was divided into two parts. A volume of 150 µl was designated for blood count and measured using an ABX Pentra 60 C+ hemoanalyzer (Horiba, Kyoto, Japan). The rest of the blood (200–300 µl) was lysed using EasyLyse™ (Dako, Glostrup, Denmark). The amount of cells in suspension was as determined by Turk’s solution (2% acetic acid; Sigma-Aldrich) using a hemocytometer chamber. Cells (5 × 105/100 µl) were marked with two panels of monoclonal antibodies. The first panel was delineated to detect T, B, and NK lymphocytes (CD3ϵ, CD4, CD8, CD19, and NK1.1). The second panel was designed for determination of monocytes and neutrophils (CD11b, F4/80, Ly6C, and Ly6G). The following monoclonal antibodies with fluorochromes for flow cytometry analysis were purchased from BioLegend (San Diego, CA, United States): anti-mouse CD3ϵ–FITC, CD4–BV421, CD19–PE, CD11c–BV421, CD45–APC/Fire™750, F4/80–PE, and from BD Bioscience: CD8–PECy7, CD11b–BV510, Ly6C–FITC, Ly6G–PECy7, and NK1.1–APC.
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9

Immunophenotyping of Murine Macrophages

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The differentiation state of BMDM and peritoneal macrophages was confirmed by staining for F4/80 and CD11b (BD Pharmingen, San Jose, CA) using monoclonal Abs as direct conjugates and their isotype controls. Splenocytes and peripheral blood cells were stained with indicated combination of the following fluorochrome-conjugated monoclonal antibodies: CD19-PerCP, B220-APC, CD11b-PerCP, F4/80-PE, Ly6G-PE, Ly6C-Fitc, CD11c-FITC, CD4-APC and CD8-PB (BD Pharmingen). Viable cells (2×105) in the lymphocyte gate, as defined according to side and forward scatters, were analyzed. Flow cytometry was performed using a LSR II instrument (BD Biosciences), and the results were analyzed using the FlowJo software (Tree Star, Inc.).
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10

Whole Blood Cell Profiling

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Whole blood was obtained (n = 6/group) and cell suspensions were prepared as previously described25 (link) and were incubated with the following antibodies: CD11b-APC, Ly6G-PE, Ly6C-FITC (all BD Pharmingen, Oxford, UK), and CD115-PerCP (eBioscience, San Diego, USA).
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