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15 protocols using anti lef1

1

Isolation and Characterization of Murine Nephron Progenitor Cells

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Total NZCs were isolated from E14.5 and E17.5 ICR mice by enzymatic digestion as previously described7 (link). For isolation of NZCs from E17.5 and P0 conditional mutants, control and mutant kidneys were sorted based on size and GFP expression (Six2-cre-EGFP and Cited1-creERT2-EGFP), and confirmed by genotyping. Enrichment for CITED1+ cells and purification (referred to as NPCs) was performed by negative depletion with magnetic activated cell sorting using phycoerythrin-conjugated antibodies and anti-phycoerythrin Microbeads according to the manufacturer's protocol (Miltenyi Biotec)2 (link)11 (link). Purified NPCs were cultured in monolayer in keratinocyte serum-free media (KSFM, Thermo Fisher Scientific) supplemented with rh-FGF2 (50 ng ml−1, R&D Systems) and 100 U ml−1 penicillin–streptomycin in plates coated with human plasma Fibronectin (100 μg ml−1, EMD Millipore). The identity of purified NPCs from ICR and conditional mutant mice was verified by immunostaining using anti-CITED1 (1:200, Cell Signaling), anti-SIX2 (1:200, Proteintech) and anti-LEF1(1:100, Cell Signaling) antibodies, and RT–qPCR analysis of cap mesenchyme and cortical interstitium markers before and after growth factor/inhibitor treatments.
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2

Western Blotting Analysis of Protein Expression

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Total protein was extracted with RIPA lysis buffer. Nuclear protein was extracted using the Nuclear-Cytosol Extraction kit (Applygen Technologies, Beijing, China). Equal amount of denatured proteins (30 µg) were separated by 12% sodium dodecyl sulfonate/polyacrylamide gel electrophoresis and transferred on to a polyvinylidene difluoride membrane. The membrane was incubated in 5% dry skim milk at room temperature (RT) for 1 h, and subsequently with anti-KMT2D (C-Term, a smaller C-terminus fragment which separates at ∼75 kDa, 1:1000, ABE206; Millipore, U.S.A.), anti-β-catenin (1:1000, 8480S; CST, U.S.A.), anti-H3K4me1 (1:1000, GTX54199; GeneTex), anti-H3K4me3 (dilution 1:1000, GTX128954; GeneTex), anti-Lef1 (dilution 1:1000, 2230S; Cell Signaling Technology), anti-Lgr4 (1:1000, sc-390630; Santa Cruz, U.S.A. ), GAPDH (1:10000, 10494-1-AP; Proteintech, China) and anti-LaminB1 (1:5000, 66095-1-Ig; Proteintech) separately at 4°C overnight. Antibody recognition was detected with horseradish peroxidase-coupled goat anti-rabbit IgG (1:5000, ZB-5301; ZSGB-BIO, China) or goat anti-mouse IgG (1:5000, ZB-5305; ZSGB-BIO, China) for 1 h at RT. GAPDH was used as an internal control for total protein detection, and LaminB1 for nuclear protein. The presentative images of three independent experiments were presented.
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3

Immunohistochemical Analysis of Key Markers

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For K14, Ki67, K10 and Lef1 immunohistochemistry in human samples, paraffin sections were deparaffinized, rehydrated, followed by antigen unmasking performed for 20 min at 98 °C in citrate buffer (pH 6) using the PT module. Endogenous peroxidase was blocked using 3% H2O2 (Merck) in methanol for 10 min at room temperature. Endogenous avidin and biotin were blocked using the Endogenous Blocking kit (Invitrogen) for 20 min at room temperature. Nonspecific antigen blocking was performed using blocking buffer. Mouse anti-K14 (rabbit, 1/2000, Thermofisher), anti-Ki67 (rabbit, 1/400, Abcam, ab15580), anti-Keratin10 (rabbit, 1/200, Biolegend, ref.90541) and anti-Lef1 (rabbit, 1/100, Cell Signaling, ref.2230) were incubated overnight at 4 °C. Anti-rabbit biotinylated with blocking buffer, Standard ABC kit, and ImmPACT DAB (Vector Laboratories) was used for the detection of horseradish peroxidase (HRP) activity. Slides were then dehydrated and mounted using SafeMount (Labonord).
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4

Western Blot Analysis of Cellular Proteins

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After treatment with radioimmunoprecipitation assay (RIPA) buffer for 30 min, approximately 20 to 30 μg of cell lysates was used for western blot analysis, as previously reported.48 (link) Proteins were detected with the following antibodies: anti-LEF1 (1: 1,000; Cell Signaling Technology; C12A5), anti-c-Myc (1:1,000; Cell Signaling Technology; D84C12), anti-cyclin D1 (1: 1,000; Cell Signaling Technology; 92G2), anti-Bcl-2 (1:1,000; Abcam; ab692), anti-Bax (1:1,000; Santa Cruz Biotechnology; SC-493), and anti-β-actin (1:2,000; Santa Cruz Biotechnology; SC-32233).
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5

Immunoprecipitation and Western Blotting of Transcription Factors

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Cells were washed with PBS and solubilised in lysis buffer (20 mM HEPES [pH 7.4], 150 mM NaCl, 1 mM EGTA, 1.5 mM MgCl2, 10% glycerol, 1% Triton X-100, 10 µg/ml aprotinin, 10 µg/ml leupeptin, 1 mM 4-(2-aminoethyl) benzenesulfonyl fluoride hydrochloride, 0.2 mM sodium orthovanadate). The lysates were centrifuged for 15 min at 4 °C at 15,000 × g. The lysates were subjected to immunoprecipitation with anti-LEF1 (Cell Signaling Technology, Danvers, MA, USA), anti-TAZ (Cell Signaling Technology), or anti-Flag (Sigma-Aldrich) antibodies or normal IgG (Cell Signaling Technology), followed by incubation with Dynabeads Protein G or A (Invitrogen). The lysates or immunoprecipitates were boiled in sodium dodecyl sulfate sample buffer containing 0.5 M β-mercaptoethanol for 5 min and subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis. Proteins were then transferred to nitrocellulose membranes. The membranes were immunoblotted with primary antibodies and visualised with horseradish peroxidase-coupled anti-mouse or anti-rabbit immunoglobulin IgG antibodies using an enhanced chemiluminescence detection kit (GE Healthcare, Buckinghamshire, UK).
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6

Western Blot Analysis of Cell Proteins

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Western blotting analysis was performed with standard techniques, as described previously [3 (link)]. Cell proteins were extracted by a modified RIPA buffer containing 0.5% sodium dodecyl sulfate (SDS) in the presence of a proteinase inhibitor cocktail (Roche, IN, USA). Polyacrylamide gel electrophoresis (PAGE) was performed to separate cell lysate proteins and then fractionated proteins were transferred onto a PVDF membrane (Amersham Biosciences, NJ, USA). Immonodetection was performed using antibodies including rabbit anti-FOXM1 polyclonal antibody, anti-cyclinD1, anti-p21, anti-LEF1, anti-c-myc, anti-Rb, anti- phosphorylated –Rb, and β-actin antibodies (Cell Signaling Technology, Danvers, MA, USA) at the dilution ratio of 1:1000. The membrane was then incubated with HRP labeled goat anti-rabbit secondary antibody (BosterBio, CA, USA) at the dilution ratio of 1:6000. Anti-β-actin (Cell Signaling Technology, Danvers, MA, USA) served as an internal control. Signals were detected by exposure to films with SuperSignal West Pico Chemoluminescent substrate (Thermo Fisher Scientific, MA, USA).
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7

Immunofluorescent Staining of Breast Tumor

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The use of fresh breast tumor specimens was approved by the research ethic committees at the Korea National Cancer Center (NCC). Informed consent was obtained from all patients. All experiments with human specimens were performed in accordance with relevant guidelines and regulations of NCC. Samples were fixed with 4% paraformaldehyde for fluorescent staining. Samples were permeabilized with 0.3 M glycine and 0.3% Triton X-100, and nonspecific binding was blocked with 2% normal swine serum (DAKO, Glostrup, Denmark). Staining was performed as described previously56 (link), using the primary anti-Wnt1 (Abcam), anti-Phalloidin (Cytoskeleton Inc.), anti-ALDH1 (Abcam), anti-TCF41 (Abcam), anti-PCNA (Abcam), and anti-LEF1 (Cell Signaling Technology). Samples were examined by fluorescence microscopy (Zeiss LSM 510 Meta). The calculation of expression was based on green fluorescence area and density divided by cell number, as determined from the number of DAPI-stained nuclei, in three randomly selected fields for each specimen from a total of three independent experiments. For quantitation, an arbitrary threshold was set to distinguish specific from background staining, and this same threshold setting was applied to all the samples analyzed.
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8

Immunohistochemistry Protocol for Vascular Markers

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The following antibodies were used for tissue immunohistochemistry: rabbit anti-GLUT1 (Thermo Fisher Scientific RB-9052-P1); rat anti-mouse PLVAP/MECA-32 (BD Biosciences 553849); mouse anti-CLDN5, Alexa Fluor 488 conjugate (Thermo Fisher Scientific 352588); rabbit anti-GFP, Alexa Fluor 488 conjugate (Thermo Fisher Scientific A21311); rabbit anti-6xMyc (JH6204), rabbit mAb anti-LEF1 (Cell Signaling Technologies C12A5), rabbit anti-ZO-1 (Invitrogen 40–2200), rabbit anti-Occludin (Invitrogen 406100), rabbit mAb anti-MDR1 (E1Y7S; Cell Signaling Technology 13978S), chicken anti-Vimentin (EMD Millipore Corp AB5733), and rabbit anti-MFSD2A (a kind gift of David Silver, Duke-NUS Medical School). Alexa Fluor-labeled secondary antibodies and GS Lectin (Isolectin GS-IB4) were from Thermo Fisher Scientific. Texas Red streptavidin was from Vector Laboratories (SA-5006). Sulfo-NHS-biotin was from Thermo Fisher Scientific (catalogue #21217).
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9

Western Blot Analysis of Wnt Pathway

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ES cells were lysed in lysis buffer (20 mM Tris-HCl, pH 7.5, 150 mM NaCl, 0.5% Triton X-100, 50 mM NaF, 2 mM EDTA, 100 μM Na-orthovanadate, 1 mM PMSF, 5 μg/ml leupeptin, and 1 μM pepstatin A). The lysates were centrifuged at 13,000 rpm for 15 min at 4℃ and the supernatant was collected and used for Western blotting. Bradford (Bio-Rad) reagent was used to measure the quantity of protein. Equal amounts of protein were boiled in Laemmli sample buffer and resolved via SDS-PAGE followed by transfer to a PVDF membrane (Pall). Anti-β-actin (Sigma), anti-TCF1 (Cell Signaling), anti-LEF1 (Cell Signaling or Santa Cruz Biotechnology), anti-TCF3 (Santa Cruz Biotechnology), anti-TCF4 (Santa Cruz Biotechnology) antibodies were used as primary antibodies.
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10

Immunohistochemical Analysis of Kidney Development

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anti-jagged1 (R&D Systems, Minneapolis, MN), anti-E-cadherin (BD Transduction Laboratories, UK), anti-wt1 (Santa Cruz, Dallas, TX), anti-LEF1 (Cell Signaling, The Netherlands), anti-Pax8 (Proteintech Europe, UK), anti-Pax2 (Covance, Princeton, NJ), anti-phospho-β-cat (S33, S37, T41) (Cell Signaling), anti-phospho-β-cat (S45) (Cell Signaling), pan β-cat (SIGMA), anti-dephospho-β-cat (AG Scientific, San Diego, CA), anti-podocalyxin, anti-laminin (SIGMA), LTL (Vector Labs, Burlingame, CA), anti-ZO1 (DSHB, Iowa City, IA), anti-pSMAD (Cell Signaling), anti-pAKT (Cell Signaling), 6-CF (SIGMA), PNA (Vector Labs), Annexin V (Biovision, San Francisco, CA), TUNEL (ROCHE, Switzerland), anti-phospho-β-cat (S552) (Cell Signaling).
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