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10 protocols using wga af647

1

Multicolor Fluorescent Imaging Protocol

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The following dyes were used: 4,6-diamidino-2-phenylindole (DAPI) (AppliChem, A1001), Alexa FluorTM 546 Phalloidin, hereafter Phalloidin-AF546 (Thermo Fisher, A22283, 1:1000), Alexa FluorTM 647 Phalloidin, hereafter Phalloidin-AF647 (Thermo Fisher, A22287, 1:1000), and Wheat Germ Agglutinin, Alexa FluorTM 647 Conjugate, hereafter WGA-AF647 (Thermo Fisher, W32466, 1:200).
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2

Quantifying TNTs in GFP-expressing cells

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HS-5 and K562 cells expressing GFP were plated on poly-l-lysine coated Lab-Tek Chamber Slides (ThermoFisher Scientific). Plasma membranes were labeled with Wheat Germ Agglutinin (WGA) conjugates: WGA-AF 647 (catalog no. W32466, ThermoFisher Scientific) or WGA-AF 488 (catalog no. W11261, ThermoFisher Scientific). Images were acquired using an SP8 Leica microscope with a ×63 or ×100 objective. For TNTs quantification ten fields (155 μm × 155 μm) with z-stacks that covered the majority of the cell volume were acquired using SP8 Leica microscope with a 63× or 100× objective. The data were manually analyzed using ImageJ software with the Cell Counter plugin.
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3

Quantifying Peri-Infarct Angiogenesis in Myocardium

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To assess angiogenesis in the infarct border-zone, 10 μm sections taken at the midpapillary level were stained with primary antibodies such as Biotinylated Griffonia Simplicifolia Lectin I (GSL I) isolectin B4 (Vector Laboratories, B-1205-.5, 1:200), anti-alpha smooth muscle Actin antibody Alexa Fluor 594 conjugate (SMA-AF594; Abcam, ab202368, 1:300), and wheat germ agglutinin, Alexa Fluor 647 conjugate (WGA-AF647, Thermo Fisher Scientific, 1:300). Slides were then stained with secondary antibodies against native streptavidin protein conjugated with fluorescein isothiocyanate (FITC, Abcam, ab136201, 1:1000). Images were taken on the Leica DM5000b (Leica, Wetzlar, Germany) at 20x magnification using a DFC350 FX monochrome camera (Leica). Three high-power fields per animal were taken of the peri-infarct myocardium, defined as one field away from WGA-labeled scar. Images were quantified for total vasculature using ImageJ. Capillaries were identified as areas expressing isolectin B4 (I-B4) alone, while areas co-expressing I-B4 and SMA were identified as arterioles.
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4

Retrograde Labeling of Hind Paw Afferents

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To specifically label afferents from the hind paw skin, 10 μl Alexa Fluor 647-conjugated wheat germ agglutinin (WGA-AF647, Thermo Fisher Scientific, Invitrogen, Eugene, Oregon, USA; 0.8% in sterile PBS) was injected intraplantar into both hind paws. The injections were performed 7 days prior to imaging. Initial experiments showed no edematous or hyperalgesic response to the retrograde label.
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5

Quantifying RBC Membrane Protein Expression

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The expression level of the RBC membrane proteins was measured by a method developed by our research group (for details, see refs [10 (link),23 (link)]). The RBC membranes were fixed with 1% formaldehyde solution and the resulting RBC membranes (ghosts) were labeled by Alexa Fluor 647 (AF647) conjugated wheat germ agglutinin (WGA-AF647, Thermo Fischer Scientific, Waltham, MA, USA, W32466). Then the samples were labeled with GLUT1 rabbit monoclonal antibody (Abcam, Cambridge, UK, ab115730), reacting with an intracellular epitope, followed by a secondary (Alexa Fluor 488-labeled goat anti-rabbit (H + L) antibody, Thermo Fischer Scientific, Waltham, MA, USA, A-11008). RBC ghosts were analyzed for antibody staining by Attune NxT acoustic flow cytometer (Applied Biosystems, Life Technologies, Carlsbad, CA, USA) with excitation wavelengths: 488 nm, emission filters: 530/30 nm for AF488 and excitation wavelengths: 637 nm, emission filters: 670/14, for AF647. The primary and secondary antibodies were titrated to provide maximum labeling.
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6

Assessing Tissue Slice Viability

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A Dextran uptake assay in combination with ryanodine receptor (RyR) immunofluorescence was performed to assess viability of the tissue slices according to a published method (Pfeuffer et al., 2023 (link)). Briefly, dextran (3 kDa) conjugated to FITC (Thermo Fisher, D3306) at a concentration of 2 mg/mL was incubated for 10 min at 37°C and 5% CO2 under continuous rocking on the MyoDish culture system platform. The slices were immediately fixed with 2% paraformaldehyde (PFA) in phosphate-buffered saline (PBS) for 10 min and then washed three times with PBS for 5 min each. Subsequently, slices were incubated with primary antibody against cardiac RyR (IgG1, mouse, C3-33, Thermo Fisher, Braunschweig, Germany) 1:200 in blocking solution (BS: 5% NGS, 5% BSA, 0.25% Triton-X in PBS) for 4 h at RT or overnight at 4°C, washed three times with PBS for 5 min and incubated with the secondary antibody goat anti-mouse IgG1 AF-555 (Thermo Fisher A-21127) 1:400 in BS for 3 h at RT. After washing, the slices were incubated with wheat germ agglutinin (WGA-AF-647 Thermo Fisher W32466) 40 μg/mL and DAPI (3665, Roth, Karlsruhe, Germany) 1.67 μg/mL in PBS for 3 h. The slices were mounted with Fluoromount G (00-4958–02, Thermo Fisher; F4680 Sigma-Aldrich, Darmstadt, Germany) on a glass microscope slide, covered with a coverslip and equilibrated for 3–7 days at 40%–45% humidity.
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7

3D STORM Imaging of Cell Heights

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For cell height measurements hearts were fixed with a solution of 4% paraformaldehyde and 0.4% glutaraldehyde for 10min (heating the solution to 28ºC and without washing previously). Cell membranes were stained with WGA-AF647 (ThermoFisher, W32466) at 1 g/mL for 10 min. Then samples were imaged in the same conditions as for actin imaging but acquiring 3D stacks. Stacks were collected for each image covering over the top of the cell with 80 nm steps and 10000 frames/step at 10ms integration time.
3D STORM data localization and fitting was performed using the STORM module of NIS-Elements using a Gaussian fitting. The first 50 frames were discarded, due to incomplete photo-switching. This analysis yielded a molecule list in binary format from which multiple emitters are automatically discarded prior to analysis. To avoid overcounting, blinkings detected in consecutive frames are counted as single by the software. 3D data reconstruction was represented in Matlab using a custom-made script for calculating maximum height, height from the leading edge and the height profile between cells.
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8

Retrograde Labeling of Hind Paw Afferents

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To specifically label afferents from the hind paw skin, 10 μl Alexa Fluor 647-conjugated wheat germ agglutinin (WGA-AF647, Thermo Fisher Scientific, Invitrogen, Eugene, Oregon, USA; 0.8 % in sterile PBS) was injected intraplantar into both hind paws. The injections were performed 7 days prior to imaging. Initial experiments showed no edematous or hyperalgesic response to the retrograde label.
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9

CD137 Signaling in Activated CD8 T Cells

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CD8 T cells were preactivated with T cell activator beads CD3/CD28. Before CD137 stimulation through CD137 (4-1BBL)–Fc–coated plates, a certain fraction of cells was preincubated with BV6 2 hours at 37°C to ensure cIAP degradation. After 15 min of CD137 stimulation, cells were fixed with 4% PFA and stained with wheat germ agglutinin (WGA) AF647 (Life Technologies), anti-CD137–AF488 (BioLegend), and HOETSCH. Images were collected using an LSM 800 confocal microscope (Zeiss). Images were analyzed using ImageJ, generating manual region of interest (ROI) in the cytoplasm of each CD8 T cell and quantifying the mean fluorescence intensity of CD137 signal in each cell cytoplasm.
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10

Fluorescent Markers for Organelle Tracking

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Primary antibodies included the following: EEA1 (Santa Cruz Biotechnology, sc-6415), Rab7 (Abcam, ab 137029), Lamp1 (BD Pharmingen, 1D4B), GFP (Life Technologies, A11122). Secondary antibodies included the following: donkey anti-goat–AF555 (Invitrogen, A21432), goat anti-rat–AF488 (Invitrogen A11006), chicken anti-rabbit–AF488 (Invitrogen, A21441).
Other reagents included the following: AF594/Fab (Jackson ImmunoResearch Laboratories Inc., 309-586-003), A488 phalloidin (Life Technologies, A12379), AF555 phalloidin (Life Technologies, A34055), DQ Green BSA (Life Technologies, D12050), Tf-AF647 (Life Technologies, T23366), dextran-AF488 (Life Technologies, ID7178), WGA-AF647 (Life Technologies, W32466).
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