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Oct medium

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom

OCT medium is a tissue-freezing medium used in the preparation of frozen tissue sections for optical coherence tomography (OCT) analysis. It is designed to provide optimal support and preservation of tissue structure during the freezing process, enabling high-quality imaging and analysis.

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51 protocols using oct medium

1

Histological Evaluation of Colonic Inflammation

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Flushed colons were opened longitudinally, cut into 4 cm and rolled. The samples were fixed in 4% paraformaldehyde (24 h, 4 °C), incubated in 30% sucrose (48 h, 4 °C) and embedded in OCT medium (ThermoFisher Scientific, Waltham, MA, USA; Cat. No. 23-730-571). Ten micrometer cross-sections were mounted on SuperFrost Plus slides (ThermoFisher Scientific, Waltham, MA, USA; Cat. No. 10149870), stained with hematoxylin phloxin safran and examined blindly by an anatomopathologist according to the following criteria: cellular infiltration and mucosal alteration (vasculitis, muscular thickening, and crypt abscesses) were graded from 0 to 3 (absent, mild, moderate and severe). Submucosal edema was scored from 0 to 2 (absent, moderate, and severe).
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2

Immunohistochemical Analysis of CAIX and CD31

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SKRC-52 tumors excised from the mice after therapy study were embedded in OCT medium (Thermo Scientific), and cryostat sections (10 μm) were cut. Slides were stored at -80 °C overnight, fixed with acetone and stained using the following antibodies: mouse anti-human CAIX GT12 (Thermo Scientific), to detect the antigen, and rat anti-mouse CD31 (BD Biosciences) to detect endothelial cells. Nuclear staining was performed with DAPI. Anti-mouse IgG-AlexaFluor488 (Molecular Probes by Life Technologies) and anti-rat IgG-AlexaFluor594 (Molecular Probes by Life Technologies) were then used as secondary antibodies for microscopic detection.
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3

Quantification of Aortic ICAM-1 Expression

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Rings of the aorta were embedded in the OCT medium (Thermo) and frozen at −80°C using Leica CM1920 automatic cryostat (Leica, Wetzlar, Germany). The 5 μm thick cross-section slides were put on the microscopic glasses coated with poli-L-lysine and fixed for 10 min in 4% buffered formalin (Merck) and used for immunostaining of intercellular cell adhesion molecule 1 (ICAM-1). Aortic rings were preincubated with 5% normal goat serum (Jackson Immuno Research) and 2% dry milk in PBS, then immunostained using rat-anti-mouse ICAM-1 (eBioscience; 1:200) primary antibody overnight at 4°C. A secondary antibody Cy3-conjugated goat-anti-rat (Jackson Immuno Research; 1:300) was used, respectively, for 30 min at room temperature. Cell nuclei were visualized by Hoechst 33258 (Sigma; 1:1000) solution, and unspecific fluorescence of aortic elastic fibers were used as a background counterstaining channel. Images were acquired using an AxioCam HRm digital monochromatic camera and an AxioObserver.D1 inverted fluorescent microscope (Carl Zeiss). ICAM-1 fluorescence was calculated as the ICAM-1 expression area divided by the tissue area expressed as a percentage (ImageJ program).
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4

Granzyme B Immunofluorescence in Tissue

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After PET imaging, animals were sacrificed and tissue in the region of LPS/PBS injections were dissected, placed in 4% paraformaldehyde for overnight incubation, and transferred to 30% sucrose solution overnight. Subsequently they were embedded in O.C.T. medium (Fischer Scientific, Waltham, MA, USA) and frozen overnight at −80 degrees. Samples were sectioned on a cryostat at 5–10-micron sections.
Anti-Granzyme B (Cat #4059, Abcam, Cambridge, MA, USA) immunofluorescence was performed according to a standard protocol [21 (link)] using Anti-Granzyme B primary antibody 1:100 and a secondary goat anti-rabbit antibody 1:1000 (Thermo Fisher, Waltham, MA, USA). Slides were imaged on an Echo Revolve 332 microscope (Echo) at 4×, 10×, and 40× magnification.
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5

Immunotherapy Combination Enhances Anti-Tumor Response

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B16F10 tumor-bearing mice were treated with combination immuno-NPs/anti-PD1, immuno-NPs only, anti-PD1 only, or left untreated on day 7 following inoculation. Mice were euthanized on day 11, 4 days following the start of therapy. Immediately following, organs were harvested, fixed in 4% PFA/PBS, dehydrated in 30% sucrose/PBS, and embedded and frozen in optimum cutting temperature medium (OCT medium, Thermo Fisher Scientific). Primary antibodies to mouse anti-PD1 and anti-PDL1 were purchased from BioXCell, while secondary antibodies were purchased from Thermo Fisher Scientific. 7-μm thick frozen sections were sectioned, blocked with goat serum, and stained with 1:50–1:100 primary antibodies overnight at 4°C, followed by staining with 1:50–1:100 secondary antibodies for 1 hr at 25°C. Following staining, sections were mounted with No. 1.5 glass coverslips using Vectashield DAPI aqueous mounting medium (Vector Laboratories). Samples were imaged using a Leica TCS SP8 gated STED confocal microscope (Leica Microsystems).
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6

Fluorescent RNA Detection in Mouse Brain

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RNAscope was used as previously described (Meirsman et al., 2016a (link)). Mice (n = 3 D1R-CTL; n = 3 D1R-Gpr88) were killed by cervical dislocation and fresh brains were extracted and embedded in optimal cutting temperature (OCT) medium (Thermo Scientific) frozen and kept at –80°C. Frozen brains were coronally sliced into 20-µm serial sections by using cryostat (CM3050 Leica), placed in superfrost slides (Thermo Scientific) and kept at –80°C until processing. In situ hybridizations were performed using the RNAscope Multiplex Fluorescent Assay. GPR88 and D1R probes were alternatively coupled to FITC or TRITC while D2R probes were coupled with Cy5.
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7

Arc Expression Quantification in Rodent Brain

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The frozen brains were embedded in optimal cutting temperature (OCT) medium (Fischer Scientific, Whitby, ON) in blocks that included tissue from every behavioral group. Coronal sections (20 μm thick) were obtained from each block and collected on slides treated with 3-aminopropyltriethoxysilane (Sigma-Aldrich, Oakville, ON) and stored at −80°C. Once thawed, sections were hybridized for 18 hours with full-length Arc riboprobes generated using MAXIscript kits (Ambion, Austin, TX) and digoxigenin-UTP labelling mix (Roche, Indianapolis, IN). Slides were subsequently incubated with anti-digoxigenin-peroxidase (1 : 400; Roche) for 2 h at RT, followed by Cy3 for 30 min at RT (1 : 50; PerkinElmer, Waltham, MA) and DAPI for 30 min at RT (Sigma-Aldrich) to stain nuclei. An Olympus FV1000 laser scanning confocal microscope obtained z-stacks (20 μm thickness, ~1.0 μm optical planes, and 0.7 μm interval between planes) in one random location in the DGIP and two locations in the DGSP, as well as from one random location in each of the proximal and distal regions of CA1, CA3a, and CA3c (see Figure 1). Neurons within the median of 20% of each z-stack were classified as Arc+ or Arc−. The total number of cells counted in each region is provided in Table 1.
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8

Immunohistochemical Analysis of SKRC-52 Tumors

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SKRC-52 tumors were excised from the animals treated with conjugate 5a or alternatively with vehicle during the therapy experiment, embedded in OCT medium (Thermo Scientific), and cryostat sections (10 μm) were cut. Slides were stained using the following antibodies: mouse antihuman CAIX GT12 (Thermo Scientific), to detect the antigen, and rat anti-mouse CD31 (BD Biosciences) to detect endothelial cells. Nuclear staining was performed with DAPI. Anti-mouse IgG-AlexaFluor488 (Molecular Probes by Life Technologies) and anti-rat IgG-AlexaFluor594 (Molecular Probes by Life Technologies) were then used as secondary antibodies for microscopic detection.
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9

Skin Biopsy Sampling and Preservation

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Skin samples were collected into stabilizing reagents and appropriate fixatives, depending on the procedure. For gene and protein expression analysis, skin samples were placed in molecular biology reagent (RNA‐stay, A&A Biotechnology, Gdansk, Poland) and frozen at −80°C. For histology, skin biopsy samples were placed in 10% buffered formalin for 48 hours, and formalin‐fixed paraffin‐embedded (FFPE). For frozen sections, biopsy samples were fixed in 4% paraformaldehyde (4% PFA, POCH S.A., Gliwice, Poland) and embedded in OCT medium (Thermo Fisher Scientific, Waltham, Massachusetts, USA) as described previously.29 Finally, the skin was placed in culture medium to initiate skin‐derived primary cell expansion. Moreover, the brains from 3 healthy horses were collected as reference material.
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10

Immunofluorescence Staining of Frozen Kidney Tissue

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The kidney tissue was snap-frozen by embedding into optimum cutting temperature (OCT) medium (Thermo Scientific). The tissues were sectioned at 5-μm in thickness and transferred over the superfrost slides. Immunofluorescence staining was performed as described previously (16 (link), 53 (link)). Antibody information can be found in Table S2.
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