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42 protocols using evos xl cell imaging system

1

Lung Pathology Analysis of Vaccinated Mice

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For these experiments, mice were vaccinated as described above and challenged with 2 × 108 CFU of P. aeruginosa PAO1. The lungs were collected from vaccinated mice at 16 h post-challenge, perfused, and fixed with 4% v/v formalin (Fisher Scientific). The samples were sectioned and stained with hematoxylin and eosin (H&E) by the WVU Pathology Department. A total of 10 images per 2 slides in each group were imaged at 10x and 40x magnification on an EVOS XL Cell Imaging System (Thermo Fisher Scientific).
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2

CTC/BMRTC Immunostaining and Imaging

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FACS‐sorted CTCs/BMRTCs were immunostained with selected primary and secondary antibodies according to a procedure previously described (Vishnoi et al., 2015). Briefly, magnified images (100×) were captured using Zeiss Axio Observer microscope Z1 (Carl Zeiss, Jena, Germany) and analyzed by zen2 software (Carl Zeiss).
For immunohistochemistry, harvested and fixed tissues were processed and stained for hematoxylin & eosin (H&E) and respective markers by the Research Pathology Core at HMRI. Images were captured using EVOS XL Cell Imaging System (Thermo Fisher Scientific) (Vishnoi et al., 2018).
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3

Visualizing Osteoclast Actin Rings

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Phalloidin staining to detect F-actin rings in differentiated osteoclasts was performed as follows: cells were washed 3 times with PBS and fixed with 4% paraformaldehyde (Electron Microscopy Sciences, PA, USA) for 20 min at room temperature followed by permeabilization with 0.1% Triton X-100 for 5 min. The cells were subjected to immunofluorescence staining with phalloidin stock solution (1:40 in PBS) (Life Technologies, CA, USA) for 20 min in dark conditions at room temperature. Cells were then washed 3 times with PBS and nuclei were counterstained with DAPI. Cells were then mounted with Prolong Gold (Thermo Fisher Scientific) and examined by fluorescence microscopy with EVOS XL Cell Imaging System (Thermo Fisher Scientific) [22] (link).
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4

Quantitative Immunofluorescence Analysis of CTCs

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FACS-isolated CTCs were subjected to quick air-dry on Millennia™ 2000 adhesive glass slides (StatLab), and fixed with 4% paraformaldehyde (21 (link)). Cells were permeabilized (0.05% Triton X-100 in 1x PBS) for 30 min, followed by 30 min incubation in blocking buffer (1% BSA + 1% normal goat serum in 1x PBS). Next, immunofluorescent cell staining was employed using selected primary and secondary antibodies. Magnified (100X) images were captured using Zeiss Axio Observer microscope Z1 (Carl Zeiss, Jena, Germany), and data were analyzed using Zeiss ZEN2 software. Harvested tissue was processed and stained for H&E and other immunohistochemistry markers by the research pathology core at HMRI. Images were captured by using EVOS XL Cell Imaging System (ThermoFisher Scientific). Immunohistochemistry images were taken and quantified by free-access ImageJ software. Reciprocal intensity (250-y) was measured by subtracting the mean intensity of the stained area (y) from the maximum (250) unstained white area intensity as described (22 ). Student t-test, type2, paired 2 were used to calculate the difference in reciprocal intensity between two groups (USP7 inhibitors treated vs. untreated) for each protein.
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5

Wound Closure Assay of Primary Cells

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Scratch wound assay was performed as follows: briefly, 2.5 × 105 patient-derived primary cells were seeded using Culture-Insert 2 Well in µ-Dish 35 mm (Ibidi, Gräfelfing, Germany). After 24 h of cell attachment, the culture was exposed to DENO (Amgen Inc., Milan, Italy) LENVA (Eisai Ltd., Milan, Italy) and DENO + LENVA or vehicle for 72 h. Images were captured with EVOS XL Cell Imaging System (Thermo Fisher Scientific, Waltham, MA, USA) at 0 and 72 h and the cell migration rate was obtained by observing the wound closure after 72 h treatment exposure and compared to untreated cells.
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6

Immunofluorescence analysis of signaling pathways

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Cells were cultured at 2×104 cells/well into 24-well plates for 48 h and treated with cisplatin, CHIR-99021, XAV-939, cisplatin + CHIR-99021, cisplatin + XAV-939 or RPMI-1640 alone for 48 h, as previously described. Cells were then fixed with 4% paraformaldehyde, permeabilized with 0.3% Triton X-100 and blocked with 5% horse serum (Vector Laboratories, Inc., Burlingame, CA, USA) in PBS-Tween for 30 min. Preparations were incubated with primary antibodies [β-catenin (1:200), JNK (1:200) and CaMKII (1:400)] as previously described at 4°C overnight and then with the appropriate fluorescently-labeled secondary antibodies (previously described; 1:1,000) for 60 min at room temperature. In addition, nuclei were stained with DAPI. Between each step, protein bands were washed with 1X PBST. Preparations were visualized and images acquired using the EVOS XL Cell Imaging System (Thermo Fisher Scientific, Inc., Waltham, MA, USA).
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7

Pore Size Determination via Microscopy

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Pore size was determined using ImageJ software from images taken with light microscopy (Thermo Fisher scientific EVOS XL Cell Imaging System). At least 30 pores were used to determine average measurements of the pore diameter of each sample.
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8

Estrous Cycle Determination in Rodents

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Estrous cycle phase was determined by daily observations of vaginal epithelial cell cytology, precopulatory, and copulatory behaviors (Marcondes et al., 2002 (link)). Epithelial cells were collected daily by vaginal lavage (during the dark phase) and visualized using an inverted light microscope (Olympus CKX53) under bright-field. Estrous cycle cell pictures were taken at 20× magnification with an EVOS XL Cell Imaging System (Thermo Fisher Scientific). Cell morphology was then used to determine cycle phase with metestrus characterized by a mix of lymphocytes, cornified cells and epithelial nucleated cells, diestrus by lymphocytes and a little to any epithelial nucleated cells, proestrus by nucleated cells that form sheets, and estrus by masses of large cornified cells that lack nuclei (see Fig. 2A). Body weight, food intake, precopulatory and copulatory behaviors (such as ear wiggling, darting, and lordosis) were also used to further verify the estrous cycle phase.
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9

ADSC-Laden Hydrogel Characterization

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As similarly detailed in Azoidis et al. [31 (link)], after detachment with 0.05% trypsin/EDTA (Sigma-Aldrich), ADSC suspensions were mixed with a 1.0% aNFC hydrogel to achieve a desired hydrogel concentration of 0.1%, 0.2%, 0.4%, or 0.5% (w/v) aNFC with cell densities of 1, 2.5, 5 × 104 or 1 × 105 cells/ml, respectively. After 30 min of incubation at 37°C, standard culture medium was added to the top of the hydrogel. Bright-field microscopy images were acquired using an inverted microscope (EVOS XL Cell Imaging System, Thermo Fisher Scientific).
For XTT viability assays, ADSCs were cultured in a 0.2% or 0.4% aNFC hydrogel in standard cultivation medium for up to 7 days at 37°C and 10% CO2. A 50% medium change was performed every 2-3 days.
Following 48 h incubation, retrieval of cells from aNFC was performed by enzymatic hydrolysis of the matrix with cellulase (600 μg/mg) (GrowDase®, UPM Biomedicals) for 6 h at 37°C. After 6 h incubation, the solution was mixed multiple times to facilitate cell liberation and then centrifuged at 300g for 10 min. The cell pellet was resuspended in (50 μl) media, and the cell count was performed using a haemocytometer and trypan blue (Sigma-Aldrich).
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10

Quantifying Cell Migration through Scratch Assays

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Cell migration was examined using scratch assays [30 (link)] in 6- and 24-well plates. Plates were prepared with 2 reference lines at the bottom side of each well to assure that the same sections were repeatedly recorded. At 80% confluence, standard starvation was initiated. Then, a small wound line was made in the cell monolayer—orthogonal to the reference lines—with the tip of a 200 µL pipette. The medium was removed, and the cells were rinsed with HEPES Buffered Saline Solution (Lonza, CC-5024) twice to remove loose cells, followed by incubation with sera at 1% (basal growth) and 5% (stimulated growth). For each well, four microscopic images were taken using transmitted-light microscopy (EVOS XL Cell Imaging System, Thermo Fisher Scientific) 48 h after scratching. The dimensions of the remaining scratch area were calculated planimetrically with ImageJ version 1.49u and the plugin MRI Wound Healing Tool (http://dev.mri.cnrs.fr/projects/imagej-macros/wiki/Wound_Healing_Tool). Migration was calculated by subtracting the basal growth response from the stimulated growth response for each group, and data are given as arbitrary units (AU). Cell counts were set in relation to the healthy controls, as described previously [31 (link),32 (link)]. All experiments were performed twice [33 (link)].
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