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Rnaisoplus assay kit

Manufactured by Takara Bio
Sourced in China

The RNAIsoPlus assay kit is a laboratory tool designed for the isolation and purification of RNA from various biological samples. The kit utilizes a proprietary procedure to effectively extract high-quality RNA, making it suitable for downstream applications such as gene expression analysis, RT-PCR, and RNA sequencing.

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4 protocols using rnaisoplus assay kit

1

Quantitative Analysis of AQP3 Expression

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Total RNA was extracted from HCC cell lines using an RNAIsoPlus assay kit (Takara, Dalian, China) according to the manufacturer’s instructions. After quantification, RNA was transcribed into cDNA using a two-step reverse transcription kit (Takara, Dalian, China). Subsequently, qPCR was used to detect target gene expression levels using the SYBR-Green qPCR master mix (Takara, Dalian, China). The thermocycling conditions were as follows: initial denaturation at 95°C for 10 min, followed by 35 cycles of a two-step PCR of 95°C for 14 s and 60°C for 1 min. The 2ΔΔCq method was used to quantify the results; the relative expression level of AQP3 was normalized to that of GAPDH. The primers used were as follows: AQP3, forward (F), 5ʹ–GGCTGTATTATGATGCAATCT–3ʹ and reverse (R), 5ʹ–ATATCCAAGTGTCCAGAGG–3ʹ. GAPDH F, 5ʹ–GATCATCAGCAATGCCTCCT–3ʹ and R, 5ʹ–GAGTCCTTCCACGATACCAA–3ʹ. The data have been deposited in a publicly accessible database (GenBank) with accession number NM_004925.5 and NM_002046.7 for AQP3 and GAPDH, respectively.
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2

Gene Expression Analysis of Osteogenic Markers

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Total RNA of cells administered different treatments was extracted using the RNAiso Plus assay kit (Trizol, Takara Biomedical Technology Co. Ltd., Beijing, China) following the manufacturer’s instructions. The quality and concentration of total RNA were assessed using a microplate reader (OD260/OD280) and 1% agarose gel electrophoresis. The isolated RNA was reverse transcribed into cDNA using the PrimeScriptTM II 1st Strand cDNA Synthesis kit (TaKaRa). The temperature protocol used for reverse transcription was 37°C for 60 min, and 85°C for 5 s. The sequences of all primers are displayed in Table 1, and qPCR was performed using SYBR Premix EX Taq (2x, Thermo Fisher Scientific, USA). The following cycling program was used for qPCR: 50°C for 3 min, 95°C for 3 min, followed by 40 cycles of 95°C for 10s and 60°C for 30s. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as the housekeeping gene, and the relative mRNA levels of RUNX2, p38 MAP kinase (p38MAPK), microtubule-associated protein 1 light chain 3 alpha (LC3-II), COL1A1, heat shock 90-like protein (p62), alkaline phosphatase (ALP), Beclin-1, Sp7 transcription factor (OSX), and bone gamma-carboxyglutamate protein (OCN) were calculated using the 2−ΔΔCt method [19 (link)].
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3

Quantifying P-glycoprotein mRNA Expression

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The total RNA content in cultured cell samples and collected tissue samples was extracted by utilizing an RNA ISO Plus assay kit (Takara) in accordance with the instructions provided by the manufacturer. In the next step, the extracted total RNA was reversely transcribed to cDNA by utilizing an Omniscript RNA Reverse Transcription Assay Kit (Qiagen). Then, the obtained cDNA was subjected to real‐time polymerase chain reaction (PCR) carried out on a 7500 real‐time PCR instrument (Applied Biosystems) in conjunction with a SYBR Green Master Mix (Thermo Fisher Scientific) in accordance with the instructions provided by the manufacturer. Finally, the relative expression of P‐gp mRNA was calculated based on the threshold value of the real‐time PCR amplification of P‐gp and normalized to the expression of housekeeping gene GAPDH. The forward and reverse primers for P‐gp mRNA was 5′‐GCTGTCAAGGAAGCCAATGCCT‐3′ and 5′‐TGCAATGGCGATCCTCTGCTTC‐3′. And the forward and reverse primers for GAPDH was 5′‐GTCTCCTCTGACTTCAACAGCG‐3′ and 5′‐ACCACCCTGTTGCTGTAGCCAA‐3′.
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4

Quantifying AQP3 Gene Expression

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Total RNA was extracted from cells using an RNAIsoPlus assay kit (Takara, Dalian, China) according to the manufacturer's instructions. After quanti cation, RNA was transcribed into cDNA using a two-step reverse transcription kit (Takara, Dalian, China). Subsequently, qPCR was used to detect target gene expression levels using the SYBR-Green qPCR master mix (Takara, Dalian, China). The thermocycling conditions were as follows: initial denaturation at 95°C for 10 min, followed by 35 cycles of a two-step PCR of 95°C for 14 s and 60°C for 1 min. The 2 ΔΔCq method was used to quantify the results; the relative expression level of AQP3 was normalized to that of GAPDH. The primers used were as follows: AQP3, forward (F), 5 -GGCTGTATTATGATGCAATCT-3 and reverse (R), 5 -ATATCCAAGTGTCCAGAGG-3 . GAPDH F, 5 -GATCATCAGCAATGCCTCCT-3 and R, 5 -GAGTCCTTCCACGATACCAA-3 . The data have been deposited in a publicly accessible database (GenBank) with accession number NM_004925.5 and NM_002046.7 for AQP3 and GAPDH, respectively 32 (link) .
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