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21 protocols using cell counting kit 8 ck04

1

Lipid Nanoparticle Formulation Protocol

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1,2-Dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) (P4329), 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[(polyethylene glycol)-2000] (DSPE-PEG2000) (880133P), and indocyanine green (1340009) were from Sigma–Aldrich (St. Louis, MO, USA). Cholesterol (A11470) were from Alfa Aesar (Shanghai, China). Cell Counting Kit-8 (CK04) were purchased from Dojindo (Tokyo, Japan).
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2

Adenovirus-infected Cell Proliferation

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Adenovirus-infected cells were grown for 24 and 48 h in GM. Cells at each time point were counted (cell counting kit-8 #CK04; Dojindo Laboratories, Kamimashiki-gun, Kumamoto, Japan) according to the manufacturer’s instructions. The indirect cell number was expressed with absolute absorbance at 450 nm (Multiskan MS; Life Technologies Inc.). The proliferation rate was calculated as the cell number at 48 h divided by the cell number at 24 h [26 (link)].
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3

Renal Cell Proliferation Modulation

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NRK-52E rat renal proximal TECs (JCRB Cell bank: IFO50480) and NRK-49F rat renal fibroblasts (JCRB Cell bank: JCRB9067) were cultured in Dulbecco’s modified Eagle’s medium (DMEM) with non-essential amino acids containing 10% fetal bovine serum (FBS) or 5% FBS, respectively. For TGF-β stimulation, the cells were either untreated or treated with various concentrations (1, 5, or 10 ng/mL) of recombinant human TGF-β1 (240-b; R&D Systems) for two days. For Fisetin treatment, the cells were untreated or treated with various concentrations (5, 10, or 20 µM) of Fisetin dissolved in DMSO. Fisetin was purchased from Selleck (S2298). Cell proliferation was assessed using a Cell Counting Kit-8 (CK04; Dojindo).
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4

Protein Purification and Antibody Validation

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Antibodies used in this study were principally purchased from Santa Cruz Biotechnology (G6PD (G-12): SC-373886 (dilution 1:1000), 6PGD (G-2): SC-398977 (dilution 1:1000), His (HIS.H8): SC-57598 (dilution 1:1000), Enolase (H-300): SC-15343 (dilution 1:1000)), Cell Signaling Technology (beta actin (8H10D10): 3700 S (dilution 1:1000)), Everest Biotech (G6PD: EB07841 (dilution 1:1000)), Advance Immunochemical (GAPDH (6C5): 6C5 (dilution 1:2000)), and Abcam (G6PD: AB87230 (dilution 1:1000), band 3 (EPR1426): AB108414 (dilution 1:1000)). TALON Superflow (28-9575-02) and bovine thrombin (91-030) were purchased from GE Healthcare and BioPharma for protein purification. Pfu Turbo polymerase (600252) used for site-directed mutagenesis was purchased from Agilent Technologies. Chymotrypsin was purchased from Promega (V1061). Cell counting kit-8 (CK04) and glutathione quantification kit (T419) were purchased from Dojindo. Cycloheximide (C7698) and chloromethyl-2’,7’-dichlorodihydrofluorescein diacetate (CM-H2DCFDA, C6827) were purchased from Sigma and Thermo Fisher Scientific, respectively. Glutathione assay kit (703002) used for blood assays was purchased from Cayman Chemical.
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5

Cell Proliferation Assay with siRNA

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Forty-eight hours after siRNA transfection, cells were collected and plated in 96-well plates at a density of 2,000 cells per well. A CCK8 (Cell Counting Kit-8, CK04, Dojindo) assay was used to analyze cell proliferation on days 0, 1, 2, 3, and 4. After 2 hours incubation with CCK8 reagent, the number of viable cells was recorded by measuring the absorbance at 450 nm.
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6

Cell Viability and Cytotoxicity Assays

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TBT (T0363) was purchased from Tokyo Chemical Industry (Tokyo, Japan). Dimethyl sulfoxide (DMSO) (043-07216) was purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan). Cell Counting Kit-8 (CK04) and cytotoxicity LDH assay kit-WST (CK12) were purchased from Dojindo Laboratories (Kumamoto, Japan). Bullet Blocking One for western blotting (13779-14), Chemi-Lumi One L (07880-54), One super (02230-14), and One ultra (11644-24) were purchased from Nacalai Tesque Ltd.
(Kyoto, Japan). Skimmed milk was purchased from Meiji Co., Ltd. (Tokyo, Japan). Can Get Signal Solution 1 (NKB-201), Solution 2 (NKB-301), SuperPrep II Cell Lysis & RT Kit for qPCR (SCQ-401), and KOD SYBR qPCR Mix (QKD-201) were obtained from TOYOBO Co., Ltd. (Osaka, Japan).
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7

PLLA-PLCL Copolymer Scaffold Characterization

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Both
PLCL and PLLA were
supplied by Jinan Daigang Biomaterial Co., Ltd. The average molecular
weight of PLLA was ∼100 kDa, and the polydispersity index (D) was less than 2.0. The l-lactide/ε-caprolactone
in the molar ratio of PLCL was approximately 50:50, the intrinsic
viscosity was 2.9 g/dL (∼400 kDa), and the D was less than 2.0. Analytically pure dichloromethane was purchased
from Tianjin Feng Chuan Chemical Reagent Technology Co., Ltd., China.
Phosphate buffer (pH = 7.3–7.4) was purchased from Beijing
Solarbio Science & Technology Co., Ltd, China. The cell counting
kit-8 (CCK-8; CK04) was bought from Dojindo (Japan). The RNAlater
(AM7020) was bought from Invitrogen (USA), and the E.Z.N.A. HP total
RNA kit (R6812) was purchased from Omega Bio-tek (Canada). The GoScriptTM
reverse transcription kit (A5000) and Hot Start fluorescent PCR core
reagent kit (A6000) were purchased from Promega (UK). Mouse monoclonal
anti-type II collagen primary antibody was purchased from Novus (USA),
and FITC-labeled goat anti-mouse secondary antibody was purchased
from EarthOx (USA).
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8

TGF-β1 Signaling in Fibrosis Model

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BLM (B107423) and OST (O101699) were purchased from Aladdin (Shanghai, China), and OST was isolated from the fruit of Cnidium ninidium with purity of 99%. TGF-β1 (H8541) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against vimentin (ab8978), collagen I (ab34710), collagen III (ab7778), connective tissue growth factor (CTGF, ab6992), 4HNE (ab48506), p-Smad3 (ab52903), and t-Smad3 (ab40854) were purchased from Abcam (Cambridge, MA, USA). Antibodies against α-smooth muscle actin (α-SMA, A2547, for Western blot analysis) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Antibodies against TGF-β (21898-1-AP), NOX4 (14347-1-AP), α-SMA (14395-1-AP, for immunofluorescence staining), and β-actin (60008-1-Ig) were purchased from Proteintech (Hubei, China). The reactive oxygen species (ROS) kit (S0033) was purchased from Beyotime (Shanghai, China), cell counting kit-8 (CCK8) (CK04) was purchased from Dojindo (Shanghai, China), and the Cytotoxicity Detection Kit (11644793001) was purchased from Roche (Hoffmann, Germany). The hydroxyproline assay kit (Cat No.A030-2) was purchased from Jiancheng Co. (Jiangsu, China), and the MDA assay kit (Cat No.S0131) was purchased from Beyotime Co. (Shanghai, China).
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9

Cell Proliferation Assay Using CCK-8

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Cell proliferation was detected using the Cell Counting Kit-8 (CCK-8, CK04; Dojindo, Tokyo, Japan) assay. A total of 1000 cells transfected with shRNA (shLINC00504#1 and #2) or control were seeded in 96-well plates and incubated at 37°C with 5% CO2. At 0, 24, 48, 72 and 96 h, CCK‐8 assay solution (10 μL) was added to each well. The absorbance at 450 nm was measured with an enzyme immunoassay analyser (Thermo Fisher Scientific, Shanghai, China).
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10

Testosterone Apoptosis Pathway in Cell Death

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Dulbecco's modified Eagle's medium/Ham's F-12 (DMEM/F12, 11330), fetal bovine serum (FBS, 12676), and 0.25% trypsin (25200-056) were purchased from Life Technologies (NY, USA). Testosterone was a kind gift from Beijing Zizhu Pharmaceutical Company (Beijing, China). A cell counting kit-8 (CCK-8, CK04) was purchased from Dojindo Molecular Technologies, Inc. (Tokyo, Japan). Fluorescein isothiocyanate (FITC) Annexin V apoptosis detection kit and propidium iodide (PI)/RNase staining buffer (550825) were purchased from BD Biosciences (CA, USA). An In Situ Cell Death Detection Kit (fluorescein, 11684795910) was purchased from Roche (Mannheim, Germany). Rabbit anti-rat β-actin (ab8227), cytochrome c (ab53056), caspase-3 (ab47131), caspase-8 (ab25901), and caspase-9 polyclonal antibodies (ab2013) were purchased from Abcam Inc. (Cambridge, MA, USA). Prestained protein ladder (26616) and Halt protease inhibitor cocktail (186229) were purchased from Thermo Scientific (IL, USA). A tumor necrosis factor alpha (TNF-α) enzyme-linked immunosorbent assay (ELISA) kit (RTA00) was purchased from R&D Systems Inc. (MN, USA). All other chemicals were purchased from either Sigma-Aldrich (MO, USA) or Beyotime Institute of Biotechnology (Nantong, Jiangsu, China).
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