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18 protocols using anti tyrosine hydroxylase

1

Western Blot Analysis of Cellular Markers

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Cell lysates were prepared with Laemmli buffer supplemented with protease inhibitors (complete tablet; Roche) and phosphatase inhibitors (PhosSTOP tablet; Roche) and analysed by Western blotting with the following primary antibodies: anti-γH2AX (Abcam); anti-PTB (Abcam); anti-nPTB (Abcam); anti-βIII Tubulin (Abcam); anti-Tyrosine Hydroxylase (Abcam); anti-GAPDH (Thermo Scientific); anti-MAP2 (Novusbio); anti-DROSHA (Cell Signaling); anti-DICER (Sigma); anti-H2AX (Millipore). Primary antibodies were revealed with peroxidase-conjugated goat anti-mouse or anti-rabbit antibodies (Jackson Immunoresearch Laboratories) and enhanced chemiluminescence system (Super Signal West Pico Pierce or Super Signal West Dura Extended). βIII Tubulin antibody was revealed with alkaline phosphatase-conjugated goat anti-chicken antibody (Santa Cruz) with a colorimetric assay.
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2

Quantification of Signaling Pathways

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Anti-p-JNK (Cat# 4668), anti-JNK (Cat# 9252), anti-p-ERK 1/2 (Cat# 4370), anti-ERK (Cat# 4695), and anti-β-actin (Cat# 3700) were purchased from Cell Signaling Technology. Anti-tyrosine hydroxylase (Cat# 75875) was purchased from Abcam. Anti-ANGPTL4 (Cat# 67577) was purchased from Proteintech. Anti-Iba1 (Cat# GB13105-1) and anti-GFAP (Cat# GB11096) antibodies were purchased from Servicebio. Luminex Mouse Magnetic Assay (Cat# LXSAMSM-11) was purchased from R&D Systems. Cytotoxicity Assay (Cat# G1782) was from Promega.
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3

Nurr1 Protein Detection and Localization

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Immunoblots were performed as described [11 ] using the following antibodies: rabbit anti-Nurr1 (1:500; Santa Cruz, Dallas, TX), anti-Rabbit HRP (1:5,000; Cell Signaling), mouse anti-Beta Actin (1:1,000; Sigma, St. Louis, MO) and anti-mouse HRP (1:5,000; Cell Signaling, Danvers, MA). For immunofluorescence staining, N2A cells and primary neurons fixed and stained as previously described [12 ]. Primary antibodies used: rabbit polyclonal anti-Nurr1 (1:250; Santa Cruz, Dallas, TX), chicken polyclonal anti-Tyrosine Hydroxylase (1:500; Abcam, Cambridge, MA), rabbit polyclonal anti-Flag (1:500; Sigma F-7425). Secondary antibodies used: Alexafluor647 (1:500; Invitrogen, Carlsbad, CA) and Alexafluor488 (1:500; Invitrogen). All imaging was performed as previously described [11 ]
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4

Immunohistochemical Profiling of Adrenal and Prostate Tumors

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Each human PC tumor case was thoroughly reviewed, formalin-fixed, and paraffin-embedded blocks were acquired within Department of Surgery, University of Alabama at Birmingham, and Dept. of Pathology, NICHD followed by the protocol described previously using DAKO immunohistochemistry kit (Pozo et al., 2013 (link)). Human adrenal tumor tissue microarray (US Biomax Inc.) was de-waxed at 60°C for 2 h followed by standard IHC protocol. Primary antibodies used included those for Cdk5 (Rockland), -p35/25 (Cell Signaling), ChrA (Abcam), anti-tyrosine hydroxylase (Abcam), and GFP (Cell Signaling). Secondary antibody alone was used as negative control. Quantitative analysis of DAB stained images were performed by using optical density (color deconvolution algorithm) within IHC profiler plug-in compatible with ImageJ digital image analysis software (Varghese et al., 2014 (link)).
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5

Immunostaining for Dopaminergic and Microglial Markers

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The brains were fixed and processed for immunostaining as described previously [31 (link)]. The primary antibodies used in this study were as follows: rabbit polyclonal anti-tyrosine hydroxylase (TH) (1:1000; Abcam, Cambridge, CA, USA) and ionized calcium-binding adaptor molecule-1 (IBA-1) (1:200, Proteintech, Chicago, IL, USA). To determine cell numbers, total nigral TH-positive cells were counted by three researchers blind to the experimental design, and the average of these scores were reported.
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6

Midbrain Protein Expression Analysis

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The midbrain was placed in a lysis buffer containing protease inhibitors and homogenized by ultrasound on ice, centrifuged at low temperature and the supernatant was collected. BCA quantitative method was used for protein quantification. After protein quantification, the loading buffer was added to each sample and heated in a water bath at 100°C for 5 minutes to prepare the sample. The sample was separated by 10% Bis-Tris gel electrophoresis, transferred to PVDF membrane, blocked in 5% skim milk powder (w/v) for 1 h, and then incubated with anti-Tyrosine Hydroxylase (Abcam, 1:1000), anti-MHC class II (Santa Cruz, 1:500), anti-Arginase-1 antibody (Cell Signaling Technology, 1:1000) at 4°C overnight. The sample was incubated with goat anti-rabbit IgG or goat anti-mouse IgG (Beyotime, 1:1000) at room temperature for 1 h. Blots were imaged by the ECL chemiluminescence (Millipore, USA) and a Gel Image System (GE, USA). Densitometry was performed by using Image J software.
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7

Multimodal Analysis of NLRP3 Inflammasome

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SDS-PAGE, immunoblotting, and real-time PCR analyses were performed as previously described.62 (link),63 (link) Gel electrophoresis was conducted using the NuPAGE system with 4–12% pre-cast gradient gels and MES/SDS running buffer (Thermo Fisher Scientific, Waltham, MA). For human mesencephalic tissues, primary antibodies for NLRP3 were the same as described above. The following antibodies were used for cell culture lysates and immunoprecipitation assays: anti-NLRP3/NALP3 (Adipogen, San Diego, CA; Cell Signaling Technology, Danvers, MA), anti-c-Myc [9E10] (Abcam, Cambridge, MA), anti-Ubiquitin (Cell Signaling, Danvers, MA), anti-BiP (HSPA5) (Cell Signaling, Danvers, MA), anti-Nurr1 (Santa Cruz Biotechnology, Dallas, TX), anti-tyrosine hydroxylase (Abcam, Cambridge, MA), and anti-actin horseradish peroxidase (HRP)-coupled (Sigma-Aldrich, St. Louis, MO) antibodies. Immunoreactivity was detected using HRP-conjugated anti-rabbit and anti-mouse secondary antibodies (Millipore, Billerica, MA) as appropriate in combination with a chemiluminescent detection method (ECL-Plus, Thermo Fisher Scientific, Waltham, MA). NLRP3 transcripts were analyzed using real-time PCR with amplification detected using SYBR Green (Bio-Rad Laboratories, Hercules, CA), NLRP3 forward primer: CACTTCCAGTTTTTGCCGGG, and NLRP3 reverse primer: GGGAATGGCTGGTGCTCAAT.
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8

Confocal Microscopy for Cell Imaging

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Confocal microscopy (LSM 700, Zeiss, Germany) was used to examine several experiments such as coculture studies, liposomal uptake, etc. For tissue culture imaging, PC12 cells were stained overnight with rabbit polyclonal anti–tyrosine hydroxylase (Abcam, Cambridge, UK), following a staining with donkey polyclonal anti-rabbit IgG H&L conjugated Alexa Fluor 488 (Abcam, Cambridge, UK). Antibodies were diluted by 1:1000 in a blocking serum. All cells were stained with Hoechst (1 μg/ml) for nuclei labeling. Acquisition was performed using the ZEN software and applying the 405-, 488-, 555-, and 639-nm lasers.
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9

Quantifying Dopaminergic Neurons in Parkinson's Model

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We used the immunohistochemical staining method to study the number of dopaminergic neurons of SNpc. Animals were killed 28 days after creating the Parkinson model, the rat brain was removed, and after the tissue processing, the middle cerebral area was evaluated by immunohistochemistry. In tissue sections, after washing with PBS buffer and retrieving the antigen, 2N hydrochloric acid was poured on the samples over minutes. Then, to penetrate the cell membrane, 0.3% Triton was used. Samples were washed with PBS, and to block the secondary antibody response, 10% goat serum was added for 30 minutes. The diluted primary antibody (anti-tyrosine hydroxylase [1:100, Abcam] monoclonal to tyrosine hydroxylase) was added to the sample and placed at a temperature of 2°C to 8°C for one night. The next day, the secondary antibody (FITC Anti-Mouse IgG2a-gamma chain [1:200, Abcam]) was added to samples and then incubated at 37°C for 1.5 h in the darkness. Then, DAPI (4′,6-diamidino-2-phenylindole) staining was used. Finally, the samples were examined by the Olympus fluorescent microscope (400×magnification).
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10

Immunohistochemical Analysis of Striatal Tyrosine Hydroxylase

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Mice were transcardially perfused with 0.9% saline, followed by 4% paraformaldehyde for tissue fixation. The corpus striatum was dissected from brain according to the mouse brain atlas, and immediately frozen in liquid nitrogen until further use. Striatal tissues were fixed in cold 4% paraformaldehyde and embedded in paraffin. For IHC, the brain tissue slide was deparaffinized. Sections were incubated with primary anti-body: anti-Tyrosine Hydroxylase (1:500; Abcam) for 60 min followed by goat-anti mouse IgG (1:1,000; Abcam) for 30 min at room temperature and visualized with diaminobezidin (DAB) reagent. After counterstaining with hematoxylin, all slices were detected using an optical microscope(CX31;Olympus, Tokyo, Japan).
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