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8 protocols using collagenase 1

1

Isolation of Mouse Lung Endothelial Cells

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Dynabeads conjugated with the anti-CD31 antibody (RRID: AB_2722705) were prepared using the Dynabeads Antibody Coupling Kit (Life Technologies, 14311D) following the manufacturer’s instructions. Mouse lung tissues were obtained immediately after sacrifice, and were washed multiple times with 1X PBS buffer (approximately 3 to 6 times). The lung tissues were then minced into 1–2 mm pieces using a scalpel in the presence of 0.25% collagenase I (Yeasen, Shanghai, China) solution (in PBS + 20% FBS) and were digested in the same solution for 45 min in a 37 °C shaking incubator. After digestion, the cells were filtered through a sterile 70 μm nylon mesh and were washed with cold 1X PBS buffer. The cells were then incubated with the conjugated dynabeads for 30 min at 4 °C to allow binding. The bead-bound cells were washed four times with 1X PBS buffer and collected using a magnet. Finally, all the bead-bound cells were resuspended in DMEM with 20% FBS before being plated.
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2

Fluorescent NP Tracking of siIL11 Delivery

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Fluorescently labeled siIL11@PPGC NPs used in this study were prepared by encapsulating siIL11 into Cy5.5-labeled PPGC NPs as described above. Twenty-four hours after inhalation of the Cy5.5-labeled siIL11@PPGC NPs, bleomycin-induced fibrosis mice were sacrificed and organs were harvested and imaged on an IVIS system (PerkinElmer, USA). To determine the majority cell subtype colocalized with the siIL11@Cy5.5-PPGC NPs, lungs were collected, minced, and digested in PBS containing collagenase I (201.3 U/ml; Yeason), 0.92 M Hepes (Beyotime), and DNase I (50.3 U/ml; Sigma-Aldrich) at 37°C for 1 hour. The obtained digestion was filtered using a 70-μm cell strainer and processed using red blood lysis buffer for 5 min. The samples were then centrifuged at 400g, resuspended in PBS containing 0.5% BSA, and filtered through a 40-μm cell strainer. The samples were subsequently incubated with antibodies against epithelial (EpCAM–Alexa Fluor 647), immune (CD45-phycoerythrin), and endothelial (CD31–Brilliant Violet 421) cell markers at 4°C for 30 min. Flow cytometry (BD Biosciences, USA) was used to determine the internalization of NPs in various cell subtypes.
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3

Isolation of Adipose-Derived Stem Cells from GDM Mice

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Primary adipose stem cells (ADSCs) were isolated from GDM mice and normal gestational mice, respectively. Under aseptic conditions, the abdominal cavity of the mice was opened, and AT from the abdominal and inguinal regions was obtained. The AT was then rinsed, minced, and collected in a pre-cooled Hank’s Balanced Salt Solution (Sangon BIOTECH, Shanghai, China). Next, 2 mg/ml collagenase I (Yeason, Shanghai, China) and 3 mM CaCl2 were added in double volume to the tissue, which was then digested at 37 ℃ for 4 h. Digestion was stopped by adding an equal volume of DMEM/F12 medium (Gibco, GIBCO, NY, USA) containing 10% FBS (Merck KGaA, Darmstadt, Germany), followed by centrifugation at 1200 g for 10 min. The cell precipitates were resuspended, washed with PBS, and cultured in DMEM/F12 medium containing 10% FBS. Mouse normal liver cells, AML12, were purchased from Shanghai Fuheng Biotechnology and cultured in DMEM/F12 medium containing 10% FBS, 1% ITS media supplement (R&D Systems, MN, USA), and 40 ng/ml dexamethasone (Merck KGaA).
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4

Establishing Cisplatin-Resistant A549 Cell Line

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A549, H1299 and PC9 cell lines were purchased from the American Type Culture Collection (ATCC) and cultured in DMEM (containing 4.5 g/L D-Glucose and no sodium pyruvate, GIBCO, Grand Island, NY, USA) supplemented with 100 μg /mL streptomycin, 10% fetal bovine serum and 100 U/mL penicillin (GIBCO, Grand Island, NY, USA). Based on previous studies, the A549 cell line, which is sensitive to cisplatin (A549/SEN), was exposed to cisplatin at increasing concentrations for 10-months to establish a cisplatin-resistant A549 cell line (A549/CR) 15 (link)-17 (link). CAFs were isolated from the tumor samples of two patients enrolled in Shanghai Chest Hospital. Tumor tissues were washed in PBS, cut into 3-4 mm pieces and digested in 1 mg/mL collagenase I (YEASEN Biotech, Shanghai, China) for 8 hours. CAFs were filtered through a 200-mesh filter of digestion solution and cultured in DMEM supplemented with 15% fetal bovine serum. All cells were cultured in a humidified atmosphere at 37 °C with 5% CO2 in normoxic (21% O2) or hypoxic (1% O2) environments.
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5

Corneal Biomechanics and Collagenase Digestion

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On D28, the properties of corneal biomechanics in rabbits were measured using Ocular Corvis® ST (Oculus Optikgeräte GmbH, Wetzlar, Germany, equipped with Corvis® ST software version V1.3rx). According to the manufacturer’s instructions, corneal biomechanical parameters, including the maximal deformation amplitude ratio (2 mm from the apex) (DA Ratio Max), were taken by the same experienced technician (20 (link)). The digestion assay of corneal tissues was performed using collagenase I (Yeasen, China) at a concentration of 650 U/ml at 37°C for 6 h. The corneal weight was measured before and after the digestion assay. The relative weight was obtained by normalizing it to the initial weight.
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6

Isolation and Stimulation of Pancreatic, Liver, and Immune Cells

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Pancreatic leukocytes were isolated using the collagenase digestion method described for flow cytometry analysis.32 Liver cells and spleen cells were acquired by simply smashing tissues and then washing with FACS buffer (HBSS + 2% NCS) for subsequent staining. Pancreatic acinar cells were isolated using collagenase I (0.2 mg/ml; Yeasen Biotech) and IV (0.2 mg/ml; Yeasen Biotech), shaken at 37°C for 10 min, and then dissociated with tips. Acinar cells were stimulated with caerulein (1 × 10−7 M) for 5 h before conditioned medium collection. Bone marrow cells were cultured with recombinant mouse M-CSF (50 ng/ml; Novoprotein, Suzhou, China) to generate BMDMs as previously described.33 (link) On day 6 of culturing, BMDMs were stimulated with LPS (100 ng/ml) for 15 min or 4 h, or injured acinar cell culture medium for further assays. βOHB (10 mM; Sigma-Aldrich), HDAC pan-inhibitor TSA (1 μM; MedChem Express, Shanghai, China) or HDAC1/3 inhibitor MS-275 (20 μM; MedChem Express) was administered 1 h before LPS stimulation.
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7

Isolation and Culture of Annulus Fibrosus Cells

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All animal-related procedures followed the NIH Guide for the Care and Use of Laboratory Animals and were approved by the Institutional Animal Care and Use Committee of Soochow University. To isolate AFCs, 8-week-old male Sprague-Dawley rats were sacrificed, and lumbar and caudal IVDs were subsequently harvested under aseptic conditions. After removing the surrounding soft tissues including muscle, ligaments and NP tissue, the remaining AF tissues were washed 3 times with phosphate-buffered saline (PBS, HyClone, Logan, UT, USA), minced into small pieces, and then digested with 2 mg/mL Collagenase I and Collagenase II (Yeasen, Shanghai, China) for 4-6 h. The so-obtained cell suspension was centrifuged at 1200 rpm for 3 min, and then cultured with DMEM/F12 containing 10% fetal bovine serum (FBS, HyClone, Logan, UT, USA) and 1% penicillin/streptomycin (Gibco, Grand Island, NY, USA) in a humidified incubator at 37 °C with 5% CO2. AFCs at passage 2 were used for all experiments in this study.
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8

Single-Cell Isolation and T-Cell Activation

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All the experiments involving human samples were in accordance with the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki Declaration and its later amendments or comparable ethical standards, based on informed consent. Tumor tissues were obtained from a patient with HCC who underwent surgery at Fudan University Shanghai Cancer Center. The samples were enzymatically digested using collagenase I, collagenase IV, and hyaluronidase (YEASEN, Shanghai, China) for 1 hr at 37°C. Single-cell suspensions were filtered with 70-µm filter units (Coring Falcon, NY, USA), and then incubated with diabody-mp or diabody-pm at 37°C for 48 hr. The hPBMCs were isolated from healthy individuals using Ficoll-Paque (GE Healthcare, Little Chalfont, UK). Autologous T cells were enriched using RosetteSep™ human T cell enrichment cocktail kits (STEMCELL technology, Canada). The hPBMCs were activated with PHA-L (2 µg/mL) (Sigma-Aldrich, MO, USA), and T cells were activated with 100 ng/mL of anti-human CD3 and anti-human CD28 antibodies (PeproTech, NJ, USA) for 48 hr.
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