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1

Baculovirus-mediated Protein Expression

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Exocyst subunits and PIP5K1C were expressed in SF9 cells cultured in Insect-XPRESS (Lonza) by baculovirus mediated expression. Baculovirus was produced using the FlexiBac methods.44 (link) SF9 cells at 1×106 cells/ml were co-transfected by the linearised Defbac viral backbone and the plasmids encoding for exocyst subunits or PIP5K1C using ESCORT-IV (Sigma). After 5 days, cells were checked for signs of viral transfection and 50-200 μl of supernatant of this P1 virus were used to infect 50 ml of insect cells to generate P2 virus. 5 days after infection, this P2 virus was again evaluated for virus production (LUNA-II; Logos Bio).
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2

Transfection of Hi5 Insect Cells

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Trichoplusia ni BTI-Tn 5B1-4 HighFiveTM cells (henceforth Hi5; Fisher Scientific) were used in the current study. The cells were grown in IPL-41 insect cell culture medium (Genaxxon Bioscience GmbH) with 10% fetal bovine serum (Sigma or Biosera) and maintained at 28°C. Transfection was performed with Escort IV (Sigma) or Biotool DNA transfection (Biotool) reagents, using 2 μg of total plasmid DNA and 6 μg of reagent per 106 cells, according to the manufacturer’s instructions.
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3

HEK293A Cell Transfection Protocol

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HEK293A cells were cultured in DMEM supplemented with 10% foetal calf serum and 1% penicillin/streptomycin in 37°C/5% CO2 incubator. Around 70 % confluence, cells were transfected with plasmids using Escort IV (Sigma) following the manufacturer’s instruction. 24 h after transfection, cells were either fixed with 4% paraformaldehyde (PFA) for imaging, or lyzed with lysis buffer for pull-down assays.
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4

Baculovirus Recombinant Protein Production

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Hi5 and Sf21 tissue culture cells were maintained in IPL-41 medium containing 10% fetal calf serum as previously described (24 (link)). Recombinant bacmid DNA was isolated from DH10B host bacteria by the lysozyme method and 0.5-2.5 μg of total DNA was used to transfect Hi5 host cells using Escort IV (Sigma) according to established methods (29 (link)). Supernatants from transfected cells were collected 7-10 days after transfection and used to re-infect fresh host cells (30 ). Supernatants of infected cell cultures, obtained 7 days after infection, were stored at -70°C as high titer (> 109 pfu/ml) stocks of recombinant infectious baculovirus particles.
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5

Immunostaining and Microscopy of Cell Lines

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NRCs were prepared according to [31 (link)], and C2C12 and HEK293 cells were prepared following standard protocols. NRCs, C2C12 and HEK293 cells were transfected using Escort III (Sigma), Lipofectamine 3000 (Invitrogen) and Escort IV (Sigma), respectively, according to manufacturer’s instructions. Following incubation at 37 °C, 5% CO2 for 24–48 h for NRCs and HEK293 cells and up to 14 days for C2C12 myoblasts to allow differentiation into myotubes, cells were prepared according to [12 (link)]. Cells were stained with primary antibodies against myosin heavy chain (clone A4.1025) [9 (link)], obscurin domain O59 [61 (link)], titin Z1Z2 [15 (link)], p62/SQSTM1 (Abcam, ab41116161) and ubiquitin (Merck, FK2, 04–263) followed by Cy3 or Cy5-conjugated goat anti-rabbit or anti-mouse IgG (H + L) secondary antibodies (Jackson ImmunoResearch ML 115–165-146, 115–175-146, 111–175-144 and BioRad STAR36D549GA) and imaged on an LSM510 (Zeiss) or SP5 (Leica) confocal microscope. Antibodies were diluted 1:100 prior to incubation.
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6

Baculovirus-Mediated Protein Expression

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Exocyst subunits and PIP5K1C were expressed in SF9 cells cultured in Insect-XPRESS (Lonza) by baculovirus mediated expression. Baculovirus was produced using the FlexiBac methods.44 (link) SF9 cells at 1x106 cells/ml were co-transfected by the linearised Defbac viral backbone and the plasmids encoding for exocyst subunits or PIP5K1C using ESCORT-IV (Sigma). After 5 days, cells were checked for signs of viral transfection and 50-200 μl of supernatant of this P1 virus were used to infect 50 ml of insect cells to generate P2 virus. 5 days after infection, this P2 virus was again evaluated for virus production (LUNA-II; Logos Bio).
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7

Luciferase Reporter Assay in SH-SY5Y Cells

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SH-SY5Y cells were obtained from American Type Culture Collection (CRL-2266, Manassas, VA, USA). The cells were grown in 100-mm dishes with high-glucose DMEM (Gibco, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (Gibco, Logan, UT, USA) and 1% antibiotic/antimycotic (Invitrogen, Carlsbad, CA, USA) at 37 °C in a humidified incubator with a 5% CO2 atmosphere. Transfections were performed using Escort IV (Sigma, Saint Louis, MO, USA). Each culture (1 × 106 cells/mL) was transfected with 1, 2.5, 5 or 10 μg of pGL4/−419-mPrkn and 1 μg of pRL-CMV as an internal control. The media was replaced with fresh media containing 10 nM TCDD for 48 h posttransfection. After 48 h, the cells were homogenized by incubation with Passive Lysis Buffer (Promega, Madison, WI, USA) for 15 min at room temperature. A luciferase activity assay was performed using the Dual-Glo Luciferase Reporter Assay System (Promega, Madison, WI, USA) according to the manufacturer’s instructions with a Modulus luminometer (Turner Biosystems, Sunnyvale, CA, USA). Blanks were obtained by performing the luciferase activity assay on mock-transfected cells. Firefly luciferase activity levels were normalized by comparison to the activity levels of Renilla luciferase.
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8

TCDD-Induced Luciferase Assay in SH-SY5Y Cells

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SH-SY5Y cells were obtained from American Type Culture Collection (CRL-2266; Manassas, VA). The cells were grown in 100-mm dishes with DMEM high glucose medium (Gibco, Carlsbad, CA) supplemented with 10% fetal bovine serum (Gibco, Logan, UT) and 1% antibiotic/antimycotic (Invitrogen, Carlsbad, CA) at 37C in a humidified incubator with a 5% CO2 atmosphere. The reporter plasmid pGL4/-832UbcH7 containing the Ubch7 gene promoter was described previously.[12 (link)] SH-SY5Y cells were cultured in DMEM high glucose medium as described above. Transfection was performed using Escort IV (Sigma, San Louis, MO). Each culture (1 × 106 cells/ml) was transfected with 5 μg of pGL4/-832UbcH7 and 1 μg of pRL-CMV as an internal control. The media was replaced with fresh media containing TCDD for 48 h posttransfection. After 48 h, the cells were homogenized by incubation with Passive Lysis Buffer (Promega, Madison, WI) for 15 min at room temperature. Luciferase activity was performed using the Dual-Glo Luciferase Reporter Assay System (Promega, Madison,WI) according to the manufacturer’s instructions in a Modulus luminometer (Turner Biosystems, Sunnyvale, CA). Blanks were obtained by performing the luciferase activity assays in mock-transfected cells. Firefly luciferase activity levels were normalized by comparison to the activity levels of Renilla luciferase.
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9

Transient Transfection of S2 Cells

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S2 cells were transiently transfected with the engineered plasmids using Escort IV (Sigma-Aldrich), according to the manufacturer’s instructions. Briefly, each well of a 6-well plate was filled with 3 × 106 S2 cells and washed twice with serum-free culture medium. 14 μl of the Escort IV was first pre-incubated alone for 30–45 min in serum-free culture medium and then 30 min together with 1.5 μg of each of the pMT-FHV RNA1 plasmids plus 1.5 μg of the pMT-FHV RNA2 plasmid (1:1 ratio). The transfection medium was added to the cells and incubated for 16 h at 27°C. After incubation, the transfection medium was replaced with fresh medium containing serum (10% FBS) and further incubated for 24 h for cell recovery. Following cell recovery, copper sulfate (CuSO4) was added to the medium to a final concentration of 700 μM to activate the plasmid promoter to express FHV RNA1 and 2. S2 cells were then observed for eGFP expression at 72 h post-activation using a Nikon Eclipse TS-100 microscope (Melville, NY, United States) and NIS Elements BR 4.11.00 imaging software (Nikon, Melville, NY, United States). The plasmid containing only eGFP (pMT-eGFP) was used as positive control for transfection and plasmid activation for eGFP expression, while the plasmid containing the wild type (WT) genome, pMT-FHV RNA1, was used as a negative control (no eGFP expression).
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10

Transfection of Bm5 and High Five Insect Cells

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The Bm5 and High Five cell lines were maintained in a complete medium consisting of IPL-41 Insect Medium (Sigma-Aldrich), supplemented with 10% heat-inactivated fetal bovine serum (Sigma-Aldrich), 0.25 μg/ml of amphotericin B (Sigma-Aldrich), 100 U/ml penicillin and 100 μg/ml streptomycin (Gibco, Life Technologies). The cells were subcultured weekly and maintained at 27.5 °C.
Bm5 and High Five cells were transfected using Escort IV (Sigma-Aldrich), according to manufacturers’ instructions. An optimized volume of the transfection reagent was used, namely 3.7 μl and 15 μl per well of a 24- and 6-well plate, respectively.
In the overexpression experiments, the expression constructs were transfected overnight, at a concentration of 1 μg/ml. In addition, the pBmIE1 helper plasmid encoding the ie-1 gene for B. mori nuclear polyhedrosis virus48 (link) was used, at a concentration of 0.3 μg/ml. In the knockdown experiments, the dsRNA was transfected at a concentration of 2.5 μg/ml. After the transfections, the medium was replaced for the complete medium above mentioned.
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