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7 protocols using facsuite software version 10

1

Immunophenotype and Differentiation of WJ-MSCs

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According to the MSC criteria of the International Society for Cell Therapy (ISCT),85 immunophenotypic analysis of WJ‐MSCs was performed by flow cytometry to determine the expression of the following markers: CD44, CD73, CD90, CD105, CD14, CD11b, HLA‐DR (MHC‐II), CD34, CD45, and CD19 (BD Biosciences). At least 10 000 events were acquired on a BD FACSVerse (BD Biosciences, New Jersey), and the results were analyzed with BD FACSuite software version 10 (BD Biosciences). The differentiation of WJ‐MSCs was tested according to the procedure outlined in a previous report.86
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2

Cell Cycle Analysis by Flow Cytometry

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HT-29 cells were subjected to fixation with 70% ethanol at 4°C for 12 h. Afterwards, a 100 μL suspension was treated with 50 μg propidium iodide (PI) at 4°C for 35 min. Lastly, cell cycle phase distribution was estimated by using a flow cytometer. 15,000 cells/sample were taken and analysed by BD FACSuite software version 1.0.
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3

Lentiviral Vector Production and Titration

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Lentiviral vectors were produced by the transient transfection of 293T cells, as described previously (16 (link)). The 293FT cells (~5×106 cells) in logarithmic growth phase were inoculated into 10 cm culture dishes and cultured for 24 h in a humidified 5% CO2 atmosphere at 37°C. The vectors were subsequently transfected into the 293FT cells using Lipofectamine® 2000 and incubated overnight under the same conditions. The following day, DMEM containing 10% FBS was changed and the viral supernatants were collected following 48 h under the same conditions, filtered using 0.45 µm pore size filters and stored at −80°C. For the determination of infectious titers, 293FT cells were infected with lentivirus (CyPA shRNA and Control shRNA) (dilution, 1:10) and incubated overnight at 37°C with 5% CO2. The cells were subsequently washed in PBS and cultured for an additional 48 h under the same conditions. GFP-positive cells were counted using a BD FACSVerse™ flow cytometer and BD FACSuite software (version 1.0) (both BD Biosciences, Franklin Lakes, NJ, USA).
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4

Immunophenotypic Analysis of Preconditioned WJ-MSCs

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After coculture, the preconditioned WJ-MSCs at passage five were detached using a 0.25% trypsin-EDTA solution and harvested in a 15 mL conical tube. After centrifugation, the WJ-MSCs were washed and resuspended in phosphate-buffered saline (PBS) with 2% FBS to block nonspecific binding sites. Immunophenotypic analysis of the preconditioned WJ-MSCs was performed according to the MSC criteria of the International Society for Cell Therapy (ISCT) [22 (link)] via flow cytometry to determine the expression of the following markers: CD44, CD73, CD90, CD105, CD14, CD11b, HLA-DR (MHC-II), CD34, CD45, and CD19 (BD Biosciences, USA). At least 10,000 events were acquired on a BD FACSVerse (BD Biosciences, NJ, USA), and the results were analyzed with BD FACSuite software version 10 (BD Biosciences, USA). The differentiation of preconditioned WJ-MSCs was analyzed according to the procedure outlined in a previous report [21 (link)].
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5

Apoptosis Assessment of Cultured Cells

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Cells were suspended in serum-free medium (6×104 cells/ml) and were transferred to a 6-well plate (10 ml cell suspension/well). After cell culture for 48 h, cells were subjected to 0.25% trypsin digestion. Subsequently, cells were stained with Annexin V-fluorescein isothiocyanate (FITC; 1:50; Dojindo Molecular Technologies, Inc.) and propidium iodide (PI, 1:50). Flow cytometry was performed to detect apoptotic cells. Data were analyzed using BD FACSuite software version 1.0 (BD Biosciences, San Jose, CA, USA). Cell apoptotic rates were calculated based on the sum of % Annexin V-FITC+/PI- and % Annexin V-FITC+/PI+ cells.
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6

Assessing Lung Cancer Cell Apoptosis

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The nuclear morphology of the A549 lung cancer cells was assessed by fluorescence microscopy following treatment of the cells to cell-permeable Hoechst 33342 dye. A total of 10 fields with 100 cells/field were selected randomly for measurement of the cells with condensed nuclei. Then, Annexin V-fluorescein isothiocyanate (FITC)/propidium iodide (PI) double staining kit (BD Biosciences, San Jose, CA, USA) was used for the determination of the percentage of the apoptotic lung cancer cells, as described previously (10 (link)) A flow cytometer, (BD Biosciences) and BD FACSuite software version 1.0 (BD Biosciences) for were used for analysis.
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7

Isolation and Analysis of IL-11+ Cells from Colitis and Colorectal Tumors

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To isolate IL-11+ cells, the colon was removed from DSS-treated Il11-Egfp reporter mice. Then, the colon was minced with scissors and digested in RPMI 1640 containing 100 U/mL Penicillin and 100 μg/mL Streptomycin, 1 mg/mL Collagenase (Wako), 0.5 mg/mL DNase (Roche), 0.5 mg/mL Dispase (Roche), and 2% (v/v) fetal bovine serum (FBS, Gibco) for 60 min. Single-cell suspensions were prepared, and cells were stained with the indicated antibodies and analyzed by LSRFortessa X-20 (BD Biosciences) or BD Verse (BD Biosciences). Data were processed by FlowJo software Version 10.7.1 (FlowJo), BD FACSDiva Software Version 8.0.1 (BD Bioscience), and BD FACSuite Software Version 1.0 (BD Bioscience).
To isolate IL-11+ cells from tumors in the colon of Il11-Egfp reporter mice treated with AOM/DSS or Apcmin/+;Il11-Egfp mice, tumor tissues were removed from non-tumor tissues. Then, single-cell suspension from tumor tissues was prepared as described above. Cells were stained with the indicated antibodies, and the expression of various cell surface markers on EGFP+ cells was analyzed by flow cytometry.
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