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Imr 32

Manufactured by Leibniz Institute DSMZ
Sourced in Germany, United Kingdom

The IMR-32 is a laboratory equipment used for cell culture. It is a human neuroblastoma cell line derived from a bone metastasis of a primary neuroblastoma tumor. This cell line is commonly used in research related to neurological conditions and cancer biology.

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11 protocols using imr 32

1

Culturing Human Neuroblastoma Cell Lines

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Human neuroblastoma cell lines SK-N-BE(2)-C (European Collection of Authenticated Cell Cultures, ECACC, Salisbury, UK) and IMR-32 (German Collection of Microorganisms and Cell Cultures, DSMZ, Darmstadt, Germany) were cultured under standard conditions in Dulbecco’s Modified Eagles Medium (DMEM containing L-glutamine and 4.5 g/L glucose, Gibco Invitrogen cell culture, Invitrogen, Paisley, UK) supplemented with 10% fetal calf serum (FCS; Sigma, St. Louis, MO, USA) and 1% non-essential amino acids (NEAA; Invitrogen, Carlsbad, CA, USA). All cell lines were regularly checked for mycoplasma and multiple contaminations (Multiplexion, Heidelberg, Germany) and routinely verified using DNA fingerprinting authentication by Multiplexion.
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2

Cytotoxicity and Genotoxicity Assays with Cell Lines

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V79 hamster lung cells, which are recommended in the OECD toxicology guidelines for hazard identification (i.e., cytotoxicity and genotoxicity) of chemicals, were purchased from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany). They were cultured in Dulbecco´s modified Eagle medium and Ham´s F12 medium (DMEM/F12) (PromoCell, Heidelberg, Germany) containing 10% fetal calf serum at 37 °C in a humidified atmosphere containing 5% CO2. VC8 hamster cells were defective in DNA double-strand break (DSB) repair by homologous recombination (HR) due to the lack of functional BRCA2 protein [69 (link),70 (link)]. VC8 cells were provided by B. Kaina (Institute of Toxicology, Mainz, Germany). Nucleotide excision repair defective XPA and CSB deficient cells were also provided by B. Kaina and were described before [83 (link),84 (link)]. They were grown in DMEM containing 10% fetal calf serum. Human neuroblastoma cells (IMR-32 and SH-SY5Y) were purchased from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany) and were used as a model of malignant cells. They were grown in DMEM or RPMI (Roswell park memorial institute) medium, respectively, containing 10% fetal calf serum. If not stated otherwise, HDACi were added to the exponentially growing cells and analyses were performed 6 h to 72 h later.
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3

Culturing Human Neuroblastoma and Medulloblastoma Cell Lines

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Human neuroblastoma cell lines SK-N-BE(2)-C (European Collection of Authenticated Cell Cultures, ECACC, Salisbury, UK), IMR-32 (German Collection of Microorganisms and Cell Cultures, DSMZ, Darmstadt, Germany), SK-N-AS (kindly provided by M. Schwab, DKFZ) and SH-SY5Y (DSMZ) as well as human medulloblastoma cell line MED8A (kindly provided by R. Gilbertson, St Jude Children’s Research Hospital, Memphis, TN, USA) and the non-transformed human foreskin fibroblast cell line VH7 (kindly provided by P. Boukamp, DKFZ) were cultured in Dulbecco’s Modified Eagle Medium (DMEM, Lonza, Basel, Switzerland) supplemented with 10% fetal calf serum (FCS, Sigma-Aldrich, Munich, Germany) and 1% non-essential amino acids (NEAA, Lonza). Kelly (DSMZ) and HD-MB03 (kindly provided by T. Milde, DKFZ) cells were cultured in RPMI 1640 medium (ThermoFisher Scientific, Braunschweig, Germany) containing 10% FCS and 1% NEAA. All cell lines were routinely authenticated using DNA fingerprinting authentication (DSMZ) and screened for mycoplasma contamination (Multiplexion, Heidelberg, Germany). All cell lines were cultured under standard conditions at 37 °C in a humidified atmosphere containing 5% CO2 and passages 15–30 were used.
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4

Neuroblastoma Cell Line Characterization

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The NB cell-lines GI-MEN, CLB-GA, LS and IMR-32 were purchased from the German Collection of Microorganisms and Cell Cultures (DSMZ). The cell lines SK-N-FI, BE(2)-C, TR14 and SH-SY5Y were obtained from the American Tissue Culture Collection (ATCC). Cell lines were cultured at 37 °C and 5% CO2 and temporarily stored in DMSO at -80 °C. CLB-GA, GI-MEN, BE(2)-C, IMR-32, TR-14, LS and SH-SY5Y were maintained in RPMI-GlutaMAX™ with 10% fetal calf serum (FCS), while SK-N-FI was maintained in DMEM supplemented with 10% FCS and 1% non-essential amino acids (Thermo Fisher Scientific, Carlsbad, CA, USA). TERT expression was determined by oligonucleotide microarray analysis (Agilent Technologies, Santa Clara, CA, USA) for all cell lines according to manufacturer’s guidelines.
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5

Cell Culture of Various Cell Lines

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Human embryonic kidney 293 cells (HEK293, CRL-1573) were purchased from American Type Culture Collection (ATCC, Manassas, VA, USA) and the neuroblastoma cell line IMR-32 from the German Collection of Microorganisms and Cell Cultures (DSMZ, Braunschweig, Germany). HEK293-GFP cells were obtained from GenTarget (SC001, San Diego, CA, USA). Human kidney fibroblasts were purchased from Innoprot (P10666, Derio, Bizkaia, Spain). All cell lines were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Biowest, Nuaillé, France) containing 10% fetal bovine serum (FBS; c.c.pro, Oberdorla, Germany), 2.5 mg/mL of glucose (Biowest, Nuaillé, France), 2 mM of L-glutamine (Biowest, Nuaillé, France), 1% non-essential amino acids (NEAA, Biowest, Nuaillé, France), and 1% penicillin-streptomycin (Biowest, Nuaillé, France) and maintained at 37 °C in humidified atmosphere with 5% CO2. When confluent, the cells were washed with phosphate buffered saline (PBS, Biowest, Nuaillé, France) and then harvested using trypsin-EDTA (Biowest, Nuaillé, France).
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6

Cell Line Characterization and Proliferation Assays

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Cell lines DU145 (ACC 261), HEK293 (ACC 305), HeLa (ACC 57), IPC298 (ACC 251), IGR39 (ACC 239), IMR32 (ACC 165), and SH-SY5Y (ACC 209) were purchased from DSMZ (Braunschweig, Germany). MDA-MB-435S (HTB129) cells were from ATCC (Manassas, VA), PNT2 cells (ECACC95012613) were obtained from ECACC (Salisbury, UK). GL15 cells were kindly provided by Dr. Fioretti (University of Perugia, Italy). Each cell line was cultured in their respective recommended medium supplemented with 10% FCS (PAA Laboratories) at 37 °C in humidified 5% CO2 atmosphere. For stablly transfected cell lines (HEK expressing KV10.1 in the pTracerCMV vector, a cell line routinely used in our laboratory (4 (link), 6 (link)– (link)8 (link)), the selection compound Zeocin (Calya) was added to the culture medium at 3 μg/ml. Transient transfections were performed using FuGENE (Roche Applied Science) or Lipofectamine 2000 (Invitrogen). Proliferation was estimated using Alamar Blue (BIOSOURCE) or WST assays (Roche Applied Science) as described (50 (link)) or by live cell imaging in an IncuCyte Zoom system (Essen Biosciences) to determine the percent confluence as a function of time.
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7

Cell Culture Conditions and Compounds

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Cell lines were maintained in DMEM (Thermo Fisher Scientific Waltham, MA, USA) medium, without glucose, glutamine, phenol red, and sodium pyruvate. The media were supplemented with 10% fetal bovine serum (Thermo Fisher Scientific Waltham, MA, USA), 2 mM glutamine (Thermo Fisher Scientific Waltham, MA, USA), and 2.5 g/L glucose (Merck, Darmstadt, Germany) and cultivated at 37 °C , 5% CO2, 21% O2 and 85% relative humidity. To avoid contact inhibition, cells were passaged every 3–4 days. The neuroblastoma cell lines BE(2)-C (RRID: CVCL_0529) were obtained from ECACC (Salisbury, UK). The IMR-32 (RRID: CV CL_0346), GI-ME-N (RRID: CVCL_1232) and SH-SY5Y (RRID: CVCL_0019) cell lines were purchased from the DSMZ (Braunschweig, Germany). Cell lines were authenticated via the Multiplex human Cell line Authentication Test (Multiplexion, Immenstaad, Germany). The active primary human foreskin fibroblasts from an infant donor (VH7) were a gift from Petra Boukamp (German Cancer Research Center (DKFZ), Heidelberg, Germany). L-glyceraldehyde (73572, Sigma-Aldrich, St. Louis, MO, USA), D-glyceraldehyde (49800, Sigma-Aldrich, St. Louis, MO, USA) were prepared in 1M stock solutions in PBS and stored at 4% before use. N-acetyl-cysteine (A9165, Sigma-Aldrich, St. Louis, MO, USA) was prepared in a 500 mM solution in PBS fresh before use in cell culture.
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8

Cell Line Validation and Maintenance

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The BE(2)-C cell line was obtained from ECACC (Salisbury, UK) and the COLO-320, IMR-32, Kelly and SH-SY5Y cell lines from the DSMZ (Braunschweig, Germany). CLB-GA, IMR-5, LAN-5, LAN-6, NBL-S, SK-N-FI and TR14 were kindly provided by J.H. Schulte (Charité, Universitätsmedizin Berlin, Germany), NB-1 by I. Oehme (DKFZ, Heidelberg, Germany), SH-EP and SK-N-AS by L. Savelyeva (DKFZ, Heidelberg), and SK-N-DZ by A. Künkele (Charité, Universitätsmedizin Berlin). OHC-NB1 (unpublished data) and HD-MB03 [36 (link)] were established in the Deubzer laboratory. Cell line authenticity was validated by high-throughput SNP-based assays [63 (link)]. All cell lines were cultured in full media (described in Supplementary Methods) at 37°C, 5% CO2, and continuous culture was avoided to maintain low passage numbers and reduce the risk of genomic alterations occurring. Cells for experiments were grown in short-term culture from low-passage stock aliquots maintained in liquid nitrogen. All cell lines were regularly monitored for Acholeplasma laidlawii and other species of mycoplasma as well as squirrel monkey retrovirus (SMRV) infections using high-throughput, multiplexed testing [64 (link)].
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9

Neuroblastoma Cell Line Characterization

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The human NB cell lines SH-SY5Y, IMR-32, GI-ME-N and Kelly were purchased from DSMZ (Braunschweig, Germany) and NB69 cells from the ECACC (Sigma-Aldrich, Munich, Germany). SK-N-BE(2)C, SK-N-SH and SK-N-AS NB cell lines were acquired from ATCC (LGC Standard, Wesel, Germany). AMC711T and U-NB1 NB cells have been described previously [31 (link), 32 (link)]. U-NB2 cells were established from a 6 year-old patient with a stage IV, non-differentiated, retroperitoneal NB with amplified MYCN, tetrasomy of chromosome 2 and imbalance of 1p36. Generation of U-NB2 cells, culture conditions and authentication of NB cells are described in more detail in Supplementary Material and Methods.
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10

Neuroblastoma Cell Lines for Research

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Neuroblastoma cell lines with MYCN amplification (LA1-5s, IMR-32, BE(2)C, LAN-5, and KELLY) and with non-MYCN amplification (SH-SY5Y, NBL-S, and SK-N-AS) were used in this study [26 (link)–31 (link)]. IMR-32 and SH-SY5Y were purchased from DSMZ (Braunschweig, Germany). BE(2)C was from ATCC (Manassas, Virginia, USA), and KELLY was from Sigma (Burlington, Massachusetts, USA). Other cell lines are from our lab stock. LA1-5 s, SK-N-AS, and BE(2)C cells were grown in DMEM with 10% fetal bovine serum (FBS). SH-SY5Y cells were cultured in DMEM with 12.5% FBS. KELLY was grown in RPMI with 10% FBS. LAN-5 and IMR-32 were cultured in RPMI with 10% FBS.
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