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Ap1903

Manufactured by Apexbio

The AP1903 is a laboratory instrument designed for nucleic acid extraction and purification. It utilizes magnetic bead technology to efficiently isolate DNA or RNA from a variety of sample types. The core function of the AP1903 is to provide a reliable and automated method for the extraction of nucleic acids for further downstream analysis.

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4 protocols using ap1903

1

Cytokine Receptor Activation Assay with HEK293T Cells

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A total of 20,000 HEK293T cells were plated into each well of a poly-l-lysine–coated 96-well flat-bottom plate and allowed to adhere overnight. A constitutive cytokine receptor vector (2.5 ng), a STAT response element vector that drives Firefly luciferase (100 ng; Promega, Madison, WI) and Renilla luciferase control reporter vector (1 ng; Promega, Madison, WI) were mixed in a final volume of 5 μl in Opti-MEM (Gibco, Thermo Fisher Scientific, Waltham, MA) (“DNA mix”). Lipofectamine 2000 (0.3 μl; Invitrogen, Thermo Fisher Scientific, Waltham, MA) in 5 μl of Opti-MEM was incubated at room temperature for 5 min and then added to the DNA mix. The mixture was incubated at room temperature for 20 min, and the total volume of 10 μl was added to each well containing HEK293T cells. Twenty-four hours after transfection, cells were left untreated, treated with AP1903 (1 μg/ml; APExBio, Houston, TX), or with the indicated cytokines diluted in serum-free media. At the indicated time points after treatment, reporter activity was determined using the Dual-Glo Luciferase Assay System (Promega, Madison, WI) as per the manufacturer’s instructions. Firefly luciferase activity was first normalized to Renilla luciferase activity, and then STATresponse element fold induction was calculated by normalizing to untransfected controls.
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2

Generating ACE2-expressing Cell Lines

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We used previously described 293T-based landing pad cells to create cell clones that express different levels of ACE2 by modifying the Kozak sequence controlling translation of the gene [37 (link)]. Prior to modification, these HEK 293T LLP-Int-BFP-IRES-iCasp9-Blast clone 3 landing pad cells [37 (link)] were maintained in D10 growth media (Dulbecco’s Modified Eagle Medium supplemented with 10% heat-inactivated fetal bovine serum, 100 U/mL penicillin, 100 μg/mL streptomycin, and 2 mM L-glutamine) supplemented with 2 μg/mL doxycycline and 10 μg/mL blasticidin. These landing pad cells were modified with ACE2 transgenic sequences by transfecting 600,000 cells with 1,200 ng of Kozak-variable AttB_ACE2-miRFP670_IRES_mCherry-H2A-P2A-PuroR recombination plasmid mixed with 5 μL of Fugene 6 reagent per 6-well. The Kozak sequences preceding ACE2 were GCCACCATG, TATCTAATG, TATTTCATG, and AATTTTATG corresponding to “high”, “medium”, “low”, and “very low” cells, respectively [12 (link)]. The cells were transfected in D10 + doxycycline growth media until day 3 after transfection, when AP1903 (ApexBio, B4168) was added to a final concentration of 10 nM to kill off unmodified landing pad cells. Once the cells reached ~ 10% confluence, the cells were switched to D10 + doxycycline growth media containing 1 μg / mL puromycin to achieve a roughly pure population of ACE2 transgenic cells.
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3

Efficient Lenti-Landing Pad Recombination

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HEK 293T cells were used to generate the lenti-landing pad line derived from LLP-Int-BFP-IRES-iCasp9-Blast as previously described [10 (link)]. Landing pad cells expressing Bxb1 integrase with a nuclear localization signal to allow for transport into the nucleus were recombined in either 24-well or 6-well plates. In the 24-well plate, 120,000 cells were transfected with 254 ng of attB recombination plasmid mixed with 0.96 μL of Fugene 6 reagent in D10-dox media. In the 6-well plate, 600,000 cells were transfected with 1,200 ng of attB recombination plasmid mixed with 5 μL of Fugene 6 reagent in D10-dox media.
Upon attB-plasmid transfection, negative selection of nonrecombined landing pad cells was performed with the addition of 10 nM AP1903 (ApexBio, B4168) to activate iCasp9. Positive selection of recombined cells was achieved with the addition of 1 μg/mL puromycin (InvivoGen, ANTPR1). Recombined cells were maintained in D10-dox with 1 μg/mL puromycin to prevent transgene silencing.
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4

HEK293T Landing Pad Cell Transfection and Selection

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One day prior to transfection, 3.6 x 105 HEK 293T landing pad cells were added per well for six total wells of a 12-well tissue culture plate. The next day, separate transfection reaction tubes were set up for each well, wherein 2.5 µg of pooled plasmid was diluted with Xfect reaction buffer (Takara Bio, 631318) to a total volume of 50 μL, followed by addition of 0.6 μL of Xfect polymer. Following incubation, the transfection mixture was added to the cells. The next day, the transfection media was replaced with fresh D10-dox media.
Four days after transfection, negative selection was used to remove the unrecombined cells through the addition of 10nM AP1903 (ApexBio, B4168), which activates the iCasp9 inducible caspase in transcriptionally active, unrecombined landing pad cells. As transcriptionally silenced landing pad cells can survive the negative selection step, the pooled mixture of cells were expanded and subsequently maintained in D10-dox containing 1 μg/mL puromycin (InvivoGen, ANTPR).
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