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6 protocols using krt19

1

Immunochemistry of 2D and 3D Cell Cultures

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For immunochemistry of cells in monolayer and 3D culture the following antibodies were used: PXDN (a gift from M. Geiszt, Semmelweis University, Budapest) 1:250, KRT19 (Abcam, #ab7754) 1:100, KRT14 (Abcam, #ab7800) 1:100, and p63 (Novocastra, #NCL-p63) 1:100. Fluorescent labelling was performed using fluorescent secondary antibodies (Alexa fluor, Thermo Fisher Scientific). Imaging was performed on Zeiss LSM 5 Pa laser-scanning microscope (Carl Zeiss) and Olympus fluoview 1200.
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2

Immunocytochemistry of Stem Cell and Differentiation Markers

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Cells were fixed with 4% paraformaldehyde, permeabilized with 0.5% Triton X-100 for 10 min, and blocked with 3% bovine serum albumin for 30 min at room temperature. After blocking, cells were incubated overnight at 4 °C with primary antibodies. Primary antibodies are NANOG, TRA-1-81 (1:250, Stem cells); KRT8, KRT18, KRT19, AP-2γ, FOXG1 (1:200, Abcam); ALDH1A3, AP-2α, AFP (1: 200, Santa Cruz); Brachyury (T) (1:50, Novus); P63 (1:100, Genetex); p-SMAD1/5/9 (1:200, Cell Signaling); CDH1, Desmoplakin (1:500, BD Biosciences). Alexa 594-conjugated secondary antibody (1:400, red, Molecular Probes, Eugene, OR) or an Alexa 488-conjugated secondary antibody (1:400, green, Molecular Probes) was used to visualize the staining. Following three washes with PBS, slides were mounted with the VECTASHIELD mounting medium (Vector Laboratories, Burlingame, CA). Prior to mounting, slides were incubated with 2 μM 4′,6-diamidino-2-phenylindole (DAPI) fluorescence (Molecular Probes) for 10 min at 37 °C to stain the nuclei. The fluorescence images were taken using the EVOS FL Auto Cell Imaging System fluorescence microscope (ThermoFisher Scientific, NY, USA).
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3

Pluripotent Stem Cell Differentiation Protocol

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The main reagents include DMEM/F12 (1:1) medium, knockout serum replacement (KSR), valproic acid, fetal bovine serum, Essential 8™ Flex Medium, Geltrex™, KSFM medium, BMP‐4, bovine pituitary extract (BPE), (Gibco), NANOG, OCT4, SOX2, SSEA‐4, TRA‐1‐81, TRA‐1‐60, Krt19, Integrinβ1, CD200, CD31 and VEGF‐A antibodies (Abcam), PDGF‐B and Ang2 antibodies (Santa Cruz), recombinant human EGF (R&D), RA, valproic acid, sodium alginate (Sigma), Matrigel® Matrix (Corning), mTeSRTM1 medium (Stem Cell), Astragalus polysaccharide (Solarbio), silk fibroin and collagen (Hefei Bomei Bio), and Dextran Texas red™ (Invitrogen). Primers were designed using Primier 6.0 software, and all primers were synthesized as shown in Table 1.
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4

Quantitative Protein Analysis in Cell Cultures

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Total protein was extracted from the cells cultured in the plates using RIPA
Lysis Buffer (Beyotime Biotechnology, Shanghai, China). After being quantified
with a BCA protein quantification kit (Beyotime Biotechnology), 30 μg of total
proteins were separated with 10% sodium dodecyl sulfate-polyacrylamide gel
electrophoresis and transferred to a PVDF transfer membrane (Millipore,
Shanghai, China). The membranes were then blocked with 5% skim milk in
Tris-buffered saline with 0.1% Tween-20 (TBST) at room temperature for 1 h and
hybridized with appropriate primary antibody (SOX9 (1 μg/mL; Abcam, Shanghai,
China), aggrecan (1 μg/mL; Abcam), collagen II (0.2 μg/mL; Abcam), collagen I (1
μg/mL; Abcam), KRT19 (1 μg/mL; Abcam), glypican 3 (2.5 μg/mL; Abcam), PAX1 (1.25
μg/mL; Abcam), GDF10 (10 μg/mL; Abcam) or GAPDH (0.1 μg/mL; Santa Cruz,
Shanghai, China)) at 4°C overnight. After that, the membranes were incubated
with a horseradish peroxidase-labeled secondary antibody (0.1 μg/mL; Santa Cruz)
for 1 h at room temperature. The immunoreactive bands were visualized using an
enhanced chemiluminescence substrate (Millipore). The expression levels of
protein were quantified by densitometry using the Image Lab™ Software (Bio-Rad
Laboratories Inc., Munich, Germany).
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5

Immunoblotting Analysis of Cancer Signaling

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Briefly, protein from cells and tissues were isolated using RIPA lysis buffer and then separated on SDS-PAGE gels and transferred to PVDF membranes. And then, the membranes were blocked with 5% skim milk in TBST, followed by incubated with the indicated primary antibodies overnight at 4 °C and then with secondary horseradish peroxidase (HRP)-conjugated secondary antibodies. Antibodies used in our study are as followed: KRT19 (Abcam, ab52625), β-catenin (Abcam, ab32572), RAC1 (Abcam, ab33186), c-Jun (Abcam, ab32137), Notch1 (Proteintech, 20687-1-AP), Jagged1 (Proteintech, 66890-1-Ig), RBP-Jk (Abcam, ab25949), Hes1 (CST, 11988), CDK2 (Proteintech, 10122-1-AP), CyclinD1 (Proteintech, 60186-1-Ig), Vimentin (Abcam, ab137321), E-cadherin (CST, 3195), GAPDH (Proteintech, 60004-1-Ig). Protein expression signals were detected by a Chemiluminescent Imaging System (Thermo Scientific, IL, USA).
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6

Western Blot Analysis of Chondrogenic Markers

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Total protein of each group was extracted by RIPA buffer containing 1% phenylmethanesulfonyl fluoride, and the concentrations were measured with a BCA quantification kit (Pierce, China). Proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes (Millipore, USA). The membranes were blocked with 5% skim milk in Tris-buffered saline with 0.1% Tween-20 (TBST) at room temperature for 1 h, followed by incubating with appropriate primary antibodies overnight at 4°C in TBST: SOX9 (1:1,000; Abcam, UK), aggrecan (1:1,000; Abcam), collagen II (1:5,000; Abcam), KRT19 (1:1,000; Abcam), PAX1 (1:400; Abcam), GDF10 (1:400; Abcam), Shh (1:1,000; Cell Signaling Technology, China), PTCH1 (1:1,000; Cell Signaling Technology), Gli1 (1:1,000; Abcam), Gli2 (1:500; Abcam), Smad3 (1:1,000; Cell Signaling Technology), p-Smad3 (1:1,000; Cell Signaling Technology), or GAPDH (1:5,000; Santa Cruz, China). After that, the membranes were incubated with horseradish peroxidase-labeled secondary antibodies (1:5,000; Santa Cruz) at room temperature for 1 h, and immunoreactivity was detected using an enhanced chemiluminescence substrate (Millipore, China). The relative protein levels were quantified by densitometry using the Quantity One Software (Bio-Rad Laboratories, Germany).
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