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Sictl

Manufactured by Horizon Discovery
Sourced in United States

The SiCTL is a versatile lab equipment product designed for various scientific applications. It functions as a silicon carbide (SiC) thermal control module, allowing for precise temperature regulation and monitoring within experimental setups. The core function of the SiCTL is to provide a reliable and accurate temperature management solution for researchers and scientists.

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7 protocols using sictl

1

Modulating Gene Expression in NSC34 Cells

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siRNA for REST (siREST) (EMU029201), siRNA for Sp1 (siSp1) (EMU061231) and siRNA for KMT2A (siKMT2A) (EMU180041) were purchased from Sigma-Aldrich, whereas the negative control (siCTL) (001910-10-05) was purchased from Dharmacon. NSC34 at 60% confluence were transfected with siRNAs (25 nM) by using Lipofectamine 2000 in Optimem medium, according to the protocol by the manufacturer (Invitrogen Srl, S. Giuliano Milanese Italy). For constructs transfection in NSC34 cells have been used the following plasmids: (1) pcDNA3.1, (2) pF151 pcDNA3.1(+)SOD1WT and (3) pF155 pcDNA3.1(+)SOD1-G93A, that were a gift from Elizabeth Fisher (Addgene plasmid # 26397 and # 26401) (Stevens et al., 2010 (link)). The amount of DNA constructs used for transient transfection (60% confluence) was: 500 ng DNA in 24-multiwell plates for MTT and LDH assays, 10 μg of DNA in 100 mm dishes for quantitative real time PCR (Q-PCR), Western blot and ChIP analysis. 24 h after transfection low serum medium containing vehicle or 100 nM MeHg was added. Transfection efficiency was evaluated by western blot analysis to demonstrate the presence of the human SOD1 protein and by Q-PCR to assess the levels of REST, Sp1 and KMT2A mRNAs after siRNAs treatment (Chong et al., 2021 (link)).
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2

Transfection of HHGMCs with siRNA

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Small interference RNAs (siRNA) include siHAPLN1 (Dharmacon, Lafayette, CO, USA), negative control siRNA (siCTL; Dharmacon), Cluster of Differentiation 44 (CD44) siRNA (siCD44; Thermo Fisher Scientific), and negative control siRNA (siCTL; Thermo Fisher Scientific) were used at transfect to HHGMCs using Lipofectamine® RNAiMAX (Thermo Fisher Scientific) in low serum medium for 24 h. The cells were harvested 24 h after transfection.
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3

Silencing Rat TLR2 in SMCs

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SMCs were transfected with small interfering RNA targeting rat TLR2 (siTlr2; final concentration, 25 nM; siGenome SmartPool; Dharmacon, Lafayette, CO) or non-targeting control small interfering RNA (siCtl; Dharmacon). Cells at 70% confluence were washed twice with HBSS, DMEM without antibiotics containing 10% fetal bovine serum was added and transfection was performed using Lipofectamine RNAiMax (Invitrogen, Carlsbad, CA) according to the manufacturer’s instructions. After 24 hours, media were removed, cells were washed twice with HBSS and DMEM with 10% fetal bovine serum was added for an additional 24 hours, at which time, media were removed and the cells were cultured under experimental conditions as indicated.
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4

Knockdown of EP4 in MDA-MB-231 Cells

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MDA-MB-231 cells were transfected using the Amaxa® Cell Line Nucleofector® Kit V, according to the manufacturer’s protocol. Briefly, 106 cells were resuspended in 100 µl Nucleofector® Solution and combined with 50 nM siRNA EP4 (Dharmacon, J-005714-06, siEP4 #1 and J-005714-07, siEP4 #2) or non-targeting control siRNA (Dharmacon, D-001810-01-05, siCtl). Samples were transferred into a 6-well plate and after 24 h, cells were serum-starved for 20 h before performing the invadopodium matrix degradation assay. Assessment of the knock-down efficiency was performed after 24 h by western-blot and immunofluorescence with EP4 antibody (Santa Cruz sc-55596; 1:100).
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5

Silencing EMT Regulators in Ovarian Cancer

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2 × 105 SKOV3 and IGROV-1 cells were transfected the day after seeding with 10 nM of each siRNA using Dharmafect 1 transfection reagent (Dharmacon, T-2001) according to the supplier's recommendations. Forty-eight hours post transfection, SKOV3 cells were either untreated or treated with 400 μM H2O2 for 1 h before RNA extraction and purification using miRNeasy kit from Qiagen. mRNA levels were measured using SYBR RT–qPCR (see above) with specific primers. GAPDH was used for internal control of mRNA quantity. SKOV3 cells are TP53 null and no expression of ZEB2 was detected in IGROV-1 cell line, thus SKOV3 and IGROV-1 were not silenced using TP53- and ZEB2-specific siRNA, respectively. siRNA used for transfection were: siZEB1 (smart pool from Dharmacon #L-006564); siZEB2 (smart pool from Dharmacon #L-006914); siTP53 (smart pool from Dharmacon #L-003329) and siCtl (Control; Dharmacon #D-001810-01). Primer sequences used for qPCR are given in Supplementary Table 2.
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6

Knockdown of THY1, SRC, and PTPN22 in NPC cells

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The THY1 shRNA sequence was based on our previous study with successful knockdown of THY1 [5 (link)]. Transfection was then conducted in a similar way for THY1 expression, as described in 4.2. For SRC and PTPN22 knockdown, siRNAs (siTHY1, Dharmacon, Lafayette, CO, USA, #L-015337-00-0005; siSRC, ThermoFisher, Waltham, MA, USA, #s13414; siPTPN22, ThermoFisher #s25225; siCTL, Dharmacon #D-001810-10-20) were transfected into NPC cells with Lipofectamine® 2000 (Invitrogen, Thermo Fisher Scientific, Waltham, MA, USA) as previously described [22 (link)].
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7

siRNA Transfection Optimization Protocol

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Lipofectamine RNAiMAX (Invitrogen) was used to transfect siRNAs according to the manufacturer's instructions. Final concentration of siRNA used varies from 20 to 40 nM. Used oligonucleotides are the following: non‐targeting siRNA (siCTL) (D‐001210‐02‐05, Dharmacon), siUBAP2L (J‐021220‐09‐0002, Dharmacon), siCUL3 (From Sumara et al, 2007 (link)), siG3BP1 (From Cirillo et al, 2020 (link)), siG3BP2 (From Cirillo et al, 2020 (link)).
Jetpei (Polyplus transfection) or X‐tremeGENE9 (Roche) DNA transfection reagents were used to perform plasmid transfections.
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