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17 protocols using bactec fx instrument

1

Blood Culture Bottle Analysis at Heidelberg

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The study was performed at the Department for Infectious Diseases at the University Hospital Heidelberg, Germany. We offer a 12-h service period on weekdays and a 10-h service period on weekends and public holidays.
Our analysis included aerobic and anaerobic blood culture bottles (BD BACTEC™ Plus Aerobic/F, BD BACTEC™ Plus Anaerobic/F) that signalled positivity between 1 November 2018 and 30 April 2019. PED blood culture bottles and those inoculated with other materials than blood (e.g. joint fluid) were excluded. The pair of an aerobic and anaerobic blood culture bottle was given the same case number, but for analysis, bottles were treated individually. After arrival at our laboratory, blood culture bottles were incubated in the BD BACTEC™ FX instrument for up to 7 days or until they signalled positive.
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2

Evaluating Antibiotic Resistance Profiles

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Strains, which were stored at −80°C, harboring two or more resistance genes were selected from our strain collection. These strains were thawed onto an agar plate. The blood culture bottles were spiked by strictly following the EUCAST RAST QC protocol (17 ). In brief, bacteria were suspended in 0.9% NaCl to a final turbidity equivalent of a 0.5 McFarland standard. One milliliter of a 1:1,000,000 diluted bacterial solution was then mixed with 5 ml of sterile sheep blood and inoculated into a BD Bactec Plus aerobic bottle (BD, Heidelberg, Germany). Bottles were incubated in a BD Bactec Fx instrument (BD, Heidelberg, Germany) at 37°C. After being flagged positive, the specimen underwent analysis using the BCID2 assay as described above.
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3

Neonatal Hematosepsis Biomarker Evaluation

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sCD14-ST, PCT, CRP, and WBC were determined by PATHFAST Immunoanalyzer and Reagents (fluorescent enzyme immunoassay, Mitsubishi Chemical Medience Corporation, Tokyo, Japan), Immunochramato Reader HR 201 (Immuno-chromatographic assay, B.R.A.H.M.S. GmbH, Germany), Olympus AU2700 Automated Chemistry Analyzer (Immune scatter turbidimetry, Beckman Coulter, Inc., Osaka, Japan), and Sysmex XE-5000 Automated Hematology Analyzer (Electrical impedance method and optical method, SYSMEX Corporation, Kobe, Japan), respectively. BD BACTEC FX Instrument and BD Phoenix-100 (New York) were used for blood culture and bacteria identification. Blood culture bottles and bacteria identification panels were purchased from Becton, Dickinson and Company (New York).
Collection and processing of clinical data: The name, gender, age, medical history, and blood biochemical test results of patients were recorded. Acute physiology and chronic health evaluation II (APACHE-II) scores were obtained for hematosepsis group.[8 ,9 (link)] Blood specimens were taken from neonates with hematosepsis and then cultured in bacteriology room. True or false-positive results were determined in combination with clinical symptoms. This study was approved by the Ethics Committee of Longyan First Affiliated Hospital of Fujian Medical University, Longyan, China. Written informed parental consent was obtained for all patients.
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4

Beta-Glucan Testing for Fungal Infections

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Patient serum samples were tested for BDG using the Beta-Glucan Test (Fujifilm Wako Chemicals Europe, Neuss, Germany) following the manufacturer’s instructions. BDG levels were determined automatically using the MT-6500 toxinometer. Serum samples with BDG level over 600 pg/ml were diluted and retested. Results were evaluated using thresholds of 3, 7, 20, 50, 100, 150 and 200 pg/ml. If not stated otherwise, the manufacturer’s proposed cut-off of 7 pg/ml was used.
Blood culture bottles (Bactec Plus aerobic/anaerobic; BD, Heidelberg, Germany) were incubated in a BD Bactec Fx instrument (BD, Heidelberg, Germany) at 37° C for a maximum of five days. Fluid from positive blood culture bottles was microscopically evaluated and inoculated onto solid media, including a Sabouraud agar plate. Yeast from solid media subcultures was identified to the species level by MALDI-TOF mass spectrometry fingerprinting using a Bruker MALDI Biotyper system.
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5

Biomarker Analysis in Sepsis Diagnosis

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Complete blood counts (CBCs) were performed on whole blood by Sysmex XE-9000 (Dasit, Italy) following the manufacturer’s instruction. NLR, PLR, and MLR were calculated by the ratio between absolute values of neutrophils, lymphocytes, monocytes, respectively, and that of platelets.
CRP protein was measured by Alinity c (Abbott, diagnostics) following the manufacturer’s instruction.
PCT and MR-proADM plasma concentrations were measured by an automated Kryptor analyzer, using a time-resolved amplified cryptate emission (TRACE) technology assay (Kryptor PCT; Brahms AG; Hennigsdorf, Germany) with commercially available immunoluminometric assays (Brahms) [5 (link),21 (link),25 (link),26 (link)].
Blood specimens from patients were collected in BACTEC bottles containing anaerobic or aerobic broth and resins. Blood culture bottles were incubated in BACTEC FX instrument (Becton Dickinson, Meylan, France) until they were positive for bacterial growth or for a maximum of 5 days. Positive samples were cultivated in selective agar media. Growing colonies were identified by MALDI-TOF (Brahms) [5 (link),21 (link),25 (link),26 (link)]. Selective and non-selective media were used for microbiological cultures.
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6

Rapid Gram-Positive Coccus Detection in Positive Blood Cultures

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Blood samples from 67 patients admitted to the Azienda Ospedaliero-Universitaria Pisana (Pisa, Italy) in the March-August 2017 period were inoculated into blood culture (BC) bottles (Becton, Dickinson & Co., Milan, Italy), collected at the SD Ospedaliera di Microbiologia and transferred to the Bactec FX instrument (Becton Dickinson) for monitoring bacterial growth. For each patient, two inclusion criteria were followed: (1) we chose the first positive BC, which was apparently monomicrobial at the Gram staining; (2) for Gram-positive cocci seen in grape-like clusters, we chose only BCs that had a time to positivity under 10 hours. Blood cultures containing Gram-negative bacilli from 55 patients and Gram-positive cocci from 12 patients were investigated. After subculture on blood agar plates (bioMérieux, Marcy l'Étoile, France), 5 of 55 (9%) and 2 of 12 (17%) cultures were found to be polymicrobial, and ID results were analyzed separately (see Section 3.3). Samples were taken as remnants of standard patient care and used anonymously. For this type of study, no written informed consent was necessary. Microbiology laboratory operation time is weekdays from 8 a.m. to 8 p.m. and weekends from 8 a.m. to 2 p.m. Blood cultures are processed every day during operating hours as soon as they are flagged positive.
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7

Blood Culture and Antimicrobial Susceptibility

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A Bactec FX Instrument (Becton, Dickinson and Company, Sparks, MD, USA) was used for blood cultures. Species identification and antimicrobial susceptibility tests were performed on the VITEK II automated system (bioMérieux, Durham, NC, USA).
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8

Polymicrobial Blood Culture Analysis

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Blood specimens, from patients admitted to Pisa University Hospital (Italy) in the period January-July 2013, were inoculated into blood culture bottles [Plus Aerobic/F and Plus Anaerobic/F, or Peds Plus F (Becton Dickinson & Co, BD, Milan, Italy)], collected at the Unità Operativa di Microbiologia Universitaria, and transferred to the Bactec FX instrument (Becton Dickinson, Franklin Lakes, NJ, USA) for monitoring the bacterial growth. From each patient, only the first positive blood culture apparently monomicrobial at the Gram-stain was included in this study. Blood cultures containing Gram-negative bacilli from 133 patients or Gram-positive cocci from 87 patients were investigated. After subculture on blood agar plates (BD), 15 (11 %) of 133 and 7 (8 %) of 87 cultures were found to be polymicrobial and analyzed separately.
The study was notified to the local committee, Comitato Etico di Area Vasta Nord-Ovest, University of Pisa, and conducted in full accordance with the principles of the Declaration of Helsinki. Samples were taken as part of the standard patient care and used anonymously. For this type of study no written informed consent was necessary.
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9

Monomicrobial Blood Culture Identification

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Blood specimens from patients admitted to the Pisa University Hospital (Italy) in the period July-December 2014 were inoculated into BC bottles [Plus Aerobic/F and Plus Anaerobic/F, or Peds Plus F (Becton Dickinson & Co, BD, Milan, Italy)], collected at the Unità Operativa di Microbiologia, and transferred to the Bactec FX instrument (Becton Dickinson, Franklin Lakes, NJ, USA) for monitoring bacterial growth. From each patient, only the first positive BC apparently monomicrobial at the Gram staining was included in this study.
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10

Rectal Swabs for Carbapenem-Resistant Enterobacteriaceae

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Rectal swabs were collected using the FecalSwab system (Copan, Brescia, Italy) containing 2 mL of modified Cary-Blair medium, and processed by an external laboratory (Synlab Toscana, Sesto Fiorentino, Italy). The specimens (10 mL of medium) were cultured on chromID CARBA SMART plates (bio-Me ´rieux, Marcy L'Etoile, France) to screen for CRE, and on McConkey agar (as a quality control of the rectal swab), within 48 h of collection. Plates were inspected for growth after 18e24 h of incubation at 35AE2 C. Colonies representative of different morphologies grown on the selective medium were identified using the Vitek 2 system (bioMe ´rieux). Phenotypic characterization of carbapenemase production was investigated according to the EUCAST guidelines for detection of mechanisms [24] . In accordance with routine laboratory protocol, blood cultures were performed at the same external laboratory as rectal swab cultures using the BACTEC FX instrument (Becton Dickinson, Franklin Lakes, NJ, USA), and bacterial identification and susceptibility testing were performed using the Vitek 2 system (bioMe ´rieux).
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