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7 protocols using anti cd45 bv421

1

Quantifying CNS-associated Phagocytes and Proinflammatory Cytokines

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After 24 hours post injection, mice were killed by CO2 asphyxiation. To evaluate levels of central nervous system (CNS)-associated phagocytes, hippocampal slices were isolated from mouse brains, suspended in DMEM supplemented with 10% FBS, and dissociated to single cells using a Pasteur pipette. Cells were then filtrated using a cell strainer, following which they were resuspended in PBS containing 10% FBS and stained with anti-CD45-BV421 (1:50, BD Biosciences) and anti-CD11b-PE antibodies (1:50, eBioscience). Cells were then analyzed via flow cytometry, and CD45+CD11b+ cells were considered as CNS-associated phagocytes (Cazareth et al., 2014 (link)). To quantify the levels of proinflammatory cytokines in the brain, hippocampal slices or whole brain tissues were homogenized using 25 mM Tris-Cl (pH 7.5) containing 1% NP-40, 150 mM NaCl, 1% sodium deoxycholate, 0.1% SDS, and protease inhibitors. The samples were then sonicated and centrifuged. The soluble fractions were normalized based on protein concentration using Bradford assay and then used to quantify the levels of proinflammatory cytokines via ELISA.
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2

Isolation and Phenotyping of DRG Immune Cells

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DRGs (L3-L5) were collected from naive or SNI mice and incubated in a solution of 1 ml of RPMI 1640 medium with 2 mg/ml of collagenase type II (Worthington Biochemical Corporation) for 30 min at 37°C. After digestion, the DRGs were mechanically ground through 40 μm cell strainer, and the cell suspension was washed with PBS 1 x. The cells were resuspended in PBS 1 x containing specific monoclonal antibodies against surface markers for 10 min at room temperature. Dead cells were excluded by Fixable Viability Dye (Catalog number 65-0865-14, Thermo Fisher Scientific, 1:3000). The following monoclonal antibodies were used: anti-CD45-BV421 (Clone 30-F11, BD Biosciences, 1:350), anti-CD11b-FITC (Clone M1/70, BD Biosciences, 1:250), anti-Ly6G-APC (Clone 1A8, BD Biosciences, 1:250), anti-Ly6C-PERCP (Clone HK1.4, eBiosciences, 1:20) and anti-CX3CR1-PE (Clone SA011F11, BioLegend, 1:250). The sample acquisition was performed by FACSVerse flow cytometry instrument (BD Biosciences, San Jose, CA, USA), and data were analyzed using FlowJo software BD (Becton, Dickinson & Company, USA).
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3

Flow Cytometry Analysis of Tumor-Infiltrating Immune Cells

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Tumor-infiltrating immune cells and splenocytes were analyzed using flow cytometry. Anti-CD45-BV421 (BD bioscience), anti-CD8-FITC (BioLegend), and anti-CD4-FITC (BD Bioscience) antibodies were used to characterize the cells (1×106) using the FACSVerseTM system (BD Bioscience, Piscataway, NJ, USA) in accordance with the manufacturer’s protocol.
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4

Inflammasome Activation and Cytokine Detection

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Cell culture reagents (e.g., PBS, DMEM, RPMI, Trypsin‐EDTA) were from Gibco, Thermo Fisher Scientific. Stimuli were as follow: LPS (UltraPure, Invivogen), nigericin (Thermo Fisher Scientific), PFO (Biotrend), LFn‐BsaK, LFn‐MxiH and PA were produced in‐house as described previously (19), and uric acid used for in‐house production of MSU crystals (Sigma‐Aldrich). Inhibitors used were CRID3 (Tocris) and VX‐765 (Selleckchem). Antibodies were as follow: anti‐ASC polyclonal antibody (AL177, Adipogen, 50 µg ml−1) or anti‐ASC monoclonal antibody (N‐15, Santa Cruz, 1:500), anti‐Caspase‐1 p20 antibody (Casper‐1, Adipogen, 1:1,000), anti‐IL‐1β antibody (BAF401, R&D Systems, 1:1,000), and anti‐GSDMD (L60, Cell Signaling Technology, 1:1,000). DRAQ5 was from Thermo Fisher Scientific. For FACS, Abs used were anti‐CD45‐BV421, Ly6G‐FITC and Ly6C‐PerCP (BD Biosciences, 1:100). HTRF for human or mouse IL‐1β were from CisBio. ELISA kits were used to detect IL‐1β, TNFα, IL‐6 or CXCL1 (DuoSet, R&D Systems). Cell viability was measured with the Cell Titer Blue kit (CTB, Promega).
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5

Mammary Epithelial Cell Isolation

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Mammary glands were pooled for the preparation of single cell suspensions and processed for flow cytometry as described34 (link). The following conjugated antibodies were used: anti-CD24-PE-Cy7 (560536, BD Pharmingen), anti-CD49f-APC (313616, Biolegend), anti-CD31-BV421 (563356, BD Pharmingen), anti-CD45-BV421 (563890, BD Pharmingen) and anti-Ter119-BV421 (563998, BD Pharmingen). Mammary epithelial cells were sorted on a FACSAria flow cytometer (Becton Dickinson) or analysed on LSRII flow cytometer analyser (Becton Dickinson).
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6

Cell Cycle Analysis of Single-cell Tumor Suspensions

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Single-cell tumor suspensions were stained with the BD Pharmingen™ FITC BrdU Flow Kit (BD Biosciences) according to the manufacturer’s instructions in order to characterize the cell cycle. Briefly, cells were incubated with bromodeoxyuridine (BrdU) for one hour and, after incubation, stained with LIVE/DEAD™ Fixable Aqua (Life Technologies, Thermo Fisher Scientific), anti-CD45 BV421 (BD Biosciences), anti-HLA-DR APC (BD Biosciences) and anti-CD49d PE (BioLegend), as described in the “Phenotypic analysis” paragraph. Cells were then fixed and permeabilized with BD Cytofix/Cytoperm Buffer and BD Cytoperm Permeabilization Buffer Plus, both provided in the kit, and treated with DNase to expose the incorporated BrdU. At the end, cells were stained with an anti-BrdU FITC mAb, to evaluate its incorporation, and with 7-aminoactinomycin D (7-AAD), to stain the total DNA content for cell cycle analysis. The LSRII flow cytometer (BD Biosciences) was used to acquire data and the FlowJo™ software (BD Biosciences) was used for the analysis.
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7

Isolation and Characterization of GBM Cell Types

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Tumor samples were either processed on the same day of resection or kept at 4°C in MACS Tissue Storage Solution (Miltenyi Biotec, Bergisch Gladbach, Germany) and processed the following day. GBM specimens were washed with 0.9% sodium chloride to remove peripheral blood traces and then digested mechanically and enzymatically by using Tumor Dissociation Kit (Miltenyi Biotec) and gentleMACS Octo Dissociator (Miltenyi Biotec) according to the manufacturer's instructions for soft tumors. Single‐cell suspensions were counted and stained with LIVE/DEAD Fixable Aqua (Life Technologies, Thermo Fisher Scientific, Waltham, Massachusetts), anti‐CD45 BV421 (BD Biosciences, Becton Dickinson, Franklin Lakes, New Jersey), anti‐CD33 PE‐Cy7 (eBioscience, Thermo Fisher Scientific, Waltham, Massachusetts), anti‐HLA‐DR APC (BD Biosciences) and anti‐CD49d PE (BioLegend, San Diego, California). In the case of cell sorting, the single‐cell suspension was subjected to either immunomagnetic bead‐based separation or fluorescence‐activated cell sorting (FACS) to isolate BMDMs and MG, as previously described.11
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