The largest database of trusted experimental protocols

Bamhi and sali restriction enzymes

Manufactured by New England Biolabs
Sourced in United States

BamHI and SalI are type II restriction enzymes that recognize and cleave specific DNA sequences. BamHI recognizes and cuts the palindromic DNA sequence 5'-GGATCC-3', while SalI recognizes and cuts the palindromic sequence 5'-GTCGAC-3'.

Automatically generated - may contain errors

4 protocols using bamhi and sali restriction enzymes

1

Codon-Optimized TCR Expression Cassette

Check if the same lab product or an alternative is used in the 5 most similar protocols
Codon-optimized A01 and A05 T cell TCR sequences were assembled into an expression cassette. In this construct, the TCR α and TCR β chain constant regions are replaced with modified murine TCR ɑ chain and TCR β chain constant regions (mTCRBC) to facilitate measurement of TCR expression by flow cytometry. It also contains an extra cysteine residue to encourage pairing between exogenous TCR chains. The TCR cassettes were synthesized through Thermo Fisher GeneArt Synthesis service and were then cloned into pRRL.PPT.MP.GFPpre59 (link),60 (link) using BamHI and SalI restriction enzymes (New England BioLabs, Ipswich, MA). All plasmids were purified using Maxi Prep kits (Qiagen, Hilden, Germany).
+ Open protocol
+ Expand
2

Cloning and Expression of T. gondii ROP18

Check if the same lab product or an alternative is used in the 5 most similar protocols
The coding sequence (CDS) of ROP18 of T. gondii RH strain (GenBank No. JX045330) was amplified from total RNA extracted from tachyzoite of T. gondii RH strain using the primers: ROP18-F (5’-GGGGGATCCATGACACTTGGTCCTTCAAAACTCG-3’) and ROP18-R (5’-GGGGTCGACTTCTGTGTGGAGATGTTCCTGCTGTTC-3’). The PCR conditions were set as follows: pre-denaturation for 5 min at 98°C followed by 35 cycles of 98°C for 20 s, 56°C for 18 s, and 72°C for 30 s; 72°C for 5 min and hold at 4°C. The PCR product was purified using Gel Extraction kit (OMEGA, China). The purified ROP18 CDS was cloned into PCMV-N-HA vector using BamHI and SalI restriction enzymes (NEB, USA), according to the manufacturer’s instructions. The constructed plasmid (PCMV-N-HA-ROP18) was transformed into E. coli DH5α competent cells (TIANGEN, China). Single bacterial colony was randomly selected and identified using PCR primers ROP18-F and ROP18-R. Positive colonies were sequenced by Genscript Corporation (Nanjing, China). The plasmid of PCMV-N-HA-ROP18 bacterial colony was extracted using Endofree Plasmid Kit (TIANGEN, China) following the manufacturer’s instructions, and the extracted plasmid was stored at −20°C until use.
+ Open protocol
+ Expand
3

Construction of SseJ Complementation Vector

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primers (IDT) were designed to specifically amplify SseJ (NCBI gene accession number NP_460590.1) and its putative promoter sequence [8 (link)] out of the Salmonella Typhimurium SL1344 genome. N-terminus primer: 5′-CCGCGCGGATCCGTCAGATAATATGTACCAGGC-3′; C-terminus primer: 5′-CGCCTCGACTTCAGTGGAATAATGATGAGC-3′. The SseJ PCR product and pACYC184 prokaryotic expression vector were digested using BamHI and SalI restriction enzymes (New England Biolabs) and ligated together using T4 DNA ligase (New England Biolabs) to generate the pSseJ complementation vector. NEB Q5 Site-Directed mutagenesis (New England Biolabs) was used to generate the H384N catalytically inactive SseJ vector derived from the SseJ complementation vector described above. Primers (IDT) were designed with a single point mutation, converting a His residue to an Asn residue. N-terminus primer: 5’-CGACCTTGTCaatCCAACCCA-3’; C-terminus primer: 5’-TTGAAGACGTATTGCGGAC-3’. The pACYC184 vector was a kind gift from Melissa Kendall (University of Virginia, Charlottesville, VA).
+ Open protocol
+ Expand
4

Codon-optimized rhesus-derived iNKT TCR Cloning

Check if the same lab product or an alternative is used in the 5 most similar protocols
Codon-optimized rhesus-derived iNKT cell TCR sequences were assembled into a TCR cassette (Linnemann et al. 2013 (link)). In this construct, the TCR-α and TCR-β chain constant regions are replaced with modified murine TCR constant regions to facilitate measurement of TCR expression and to encourage pairing between exogenous TCR chains. The TCR cassettes were synthesized through Thermo Fisher GeneArt Synthesis service and were then cloned into pRRL.PPT.MP.GFPpre (Jing et al. 2016 (link); Zhou et al. 2012 (link)) using BamHI and SalI restriction enzymes (New England BioLabs, Ipswich, MA). All plasmids were purified using Maxi Prep kits (Qiagen, Hilden, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!