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6 protocols using s1076

1

Evaluating Small Molecule Responses

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The following compounds were used under indicated conditions: Ro-3306 (CDK1 inhibitor, 9 μM, 20 h, S7747; Selleck Chemicals, Houston, TX); anisomycin (500 nM, 24 h, sc-3524; Santa Cruz Biotechnology, Dallas, TX, USA); thapsigargin (100 nM, 24 h, 586005; Sigma-Aldrich); metformin (1 mM, 24 h, 136-18662; FUJIFILM Wako Pure Chemical Corporation); SIN-1 (1 mM, 3 h, ab141525; Abcam); TNF-α (50 ng/ml, 24 h, 300-01 A; PeproTech, Rocky Hill, NJ); cisplatin (2 μM, 24 h, S1166; Selleck Chemicals); doxorubicin (2 μM, 24 h, ab120629; Abcam); SP600125 (JNK inhibitor, 5 μM, 36 h, S1460; Selleck Chemicals); SB203580 (p38 inhibitor, 5 μM, 36 h, S1076; Selleck Chemicals).
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2

HepG2 Cell Culture and Treatment with HT and SB203580

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Human hepatocarcinoma HepG2 cell line was obtained from American Type Culture Collection (ATCC, Manassas, VA, USA). The cells were routinely cultured in Dulbecco's modified Eagle's medium (DMEM, 11965-092, Gibco, Grand island, NY, USA) supplemented with 10% fetal bovine serum (FBS, 10270-106, Gibco, Grand island, NY, USA) and 1% penicillin-streptomycin (15140148, Gibco, Grand island, NY, USA) in a humidified incubator containing 5% CO2 and 95% air at 37°C. The cells were serially subcultured at 1 : 3 split ratio.
HT was prepared in dimethylsulfoxide (DMSO, D2650, Sigma-Aldrich, St. Louis, MO, USA) at a concentration of 100 mM. HepG2 cells were seeded in 6-well plates at a density of 5 × 105 cells/well in 1 mL DMEM containing 10% FBS for 24 h for attachment. In the experiments with pharmacological inhibitor, the medium was replaced with fresh medium with solvent vehicle (DMSO) or diverse concentrations (10, 25, and 50 μM) of HT or selective inhibitor of p38, SB203580 (SB, 20 μM, S1076, Selleckchem, Houston, USA) for 12 h. An equal amount of DMSO, which the proportion is 1/1000, was always tested as the negative control to assure that the solvent vehicle has no influence.
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3

Drug-Induced Seizure Recovery in Drosophila Larvae

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Wall-climbing 3rd instar larvae were subjected to an electric shock to induce seizure, with or without previous feeding of drug, as described previously (Marley and Baines, 2011 (link)). For drug feeding studies, eggs were laid on food containing drug and larvae were raised until wall-climbing 3rd instar. Concentration of the drugs used are as follows and the most effective concentration shown in Table 2 is underlined: SB203580 (2.6 and 13 µM, S1076, Selleckchem), Losmapimod (2.6, 13 and 26 µM, S7215, Selleckchem), sodium fluoride (1.2 and 2.4 mM, S7920, Sigma-Aldrich), gemcitabine (3.3, 16.5 and 165 µM, G6423, Sigma-Aldrich), Metformin (1.2, 2.4 and 3.6 mM, PHR1084, Sigma-Aldrich), bestatin (81 and 162 µM, J61106.MC, Alfa Aesar), WP1066 (140 and 281 µM, 573097, Merck), valproic acid (0.6, 1.2 and 2.4 mM, P4543, Sigma-Aldrich) and phenytoin (1.6 mM, D4505, Sigma-Aldrich). In response to electroshock, larvae undergo a transitory paralysis during which they tonically contract and, occasionally, spasm (see (Marley and Baines, 2011 (link)) for details on seizure behavior). Recovery time reported represents the average time for larvae to resume normal crawling behaviour and at least 30 larvae were tested for each chemical inhibitor treatment.
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4

miRNA-23b-3p and HS6ST2 Modulate Chondrocyte Response

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SW1353 cells were seeded in 12-well plates at 7 × 104 for 24 h (C28/I2 1.2 × 105 cells/well). After transfection with 10 nM mimic miR-23b-3p or 50 nM si-HS6ST2 mixture for 24 h, the chondrocytes were incubated with or without SB203580 (10 μM, p38 MAPK chemical inhibitor, Selleck, catalog S1076). After 2 h, the cells were treated with TNF-α (10 ng/ml, Sino Biological lnc, catalog HG10602-M) for another 24 h (SW1353 cells) or 6 h (C28/I2 cells), and then the cells were harvested for further analysis.
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5

Tamoxifen, Rapamycin, and SB203580 Treatments

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Tamoxifen (Sigma) was dissolved in corn oil, and mice were injected with 10 mg per dose daily for 3 consecutive days to activate CreERT. To inhibit mTORC1, mice were injected with RAP (3 mg/kg, Selleck, s1039) daily for the periods indicated in the study. To inhibit p38 MAPKs, mice were injected with SB203580 (5 mg/kg, Selleck, S1076) daily for the time indicated in the study. For long-term RAP or SB203580 administration, we waited at least 3 days after completion of drug treatment before doing experiments to avoid acute effects of the drugs. For ionizing radiation, mice were exposed to γ-irradiation with a dose of 5 Gy, and mice were killed 2, 3, or 6 days after IR.
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6

Intracerebroventricular Injection of SB203580

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The rats were anesthetized with a 2% isoflurane-oxygen mixture and their heads were fixed in a stereotactic frame. Five microliters (μl) of a solution containing SB203580 (1 mM in 1% DMSO, #S1076 Selleckchem.com) or 1% DMSO were administered by ICV injection to the right hemisphere. The injections were performed using a 5-μl Hamilton syringe with a 26-gauge needle (Hamilton Company, Nevada, USA). The location of each injection was 0.8 mm posterior to the bregma, 1.5 mm lateral to the midline, and 3.5 mm deep into the skull surface.
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