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14 protocols using sdm 79 medium

1

Measuring Trypanocidal Activity of DMNQ

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Bloodstream form cells of T. brucei Lister 427 were maintained in HMI-9 medium containing 10% fetal bovine serum (FBS), 10% Serum Plus (Sigma-Aldrich) at 37°C with 5% CO2. PCF cells of T. brucei Lister 427 were maintained in SDM-79 medium (Invitrogen) containing 10% FBS at 25°C with 5% CO2. HEK293T cells were maintained in DMEM medium containing 10% FBS at 37°C with 5% CO2.
To measure the trypanocidal activity of the small molecule DMNQ, 50 μL of BSF cells (2 × 104 cells mL–1), PCF cells (2 × 105 cells mL–1), or HEK293T cells (5 × 104 mL–1) were seeded into wells of a 96-well Optical-Bottom Plates (Thermo Fisher Scientific). Fifty microliters of DMSO or DMSO containing the small molecule DMNQ were added to wells to achieve a concentration of DMNQ ranging from 0 to 10 μM. Following incubation of cells at their appropriate temperatures for 24 or 48 h in the presence of DMNQ, 100 μL of CellTiter-Glo reagent (Promega) was added to each well, the plate was incubated at room temperature for 30 min, luminescence was measured, and cell viability was determined according to the manufacturer’s protocol.
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2

Characterization of Fluorescent Protein Conjugates

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Holo-transferrin, xrabbit anti-protein A antibody and bovine serum albumin were purchased from Sigma (Sigma Chemical Co, St. Louis, MO, USA). Alexa Fluor 488 and Alexa Fluor 594-conjugated rabbit anti-mouse IgGs were purchased from Molecular Probes (Carlsbad, CA, USA). AP-conjugated rabbit anti-mouse IgG was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). SDM79 medium, molecular weight markers (Benchmark Protein Ladder, 10–220 kDa) and the fluorescent dye Hoechst 33342 trihydrochloride were purchased from Invitrogen (Eugene, OR, USA). Alexa Fluor 488-conjugated albumin and Alexa Fluor 633-conjugated transferrin were purchased from Invitrogen (Carlsbad, CA, USA).
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3

Cultivation of T. brucei Bloodstream and Procyclic Forms

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T. brucei bloodstream form cells, Lister strain 427, VSG variant MITat1.2
20 (link)
(kindly provided by Prof. George Cross) were cultured at 37°C with 5% CO
2 in cell culture flasks with filter lids (Greiner). Cells were grown to a maximum density of 3x10
6 cells/ml in HMI-9T medium (HMI-9 powder, Gibco Catalog Number: 07490915N). HMI-9T contains variations on the HMI-9 medium described in
21 (link): thioglycerol (Sigma, Catalog Number: m6145) was used instead of β-mercaptoethanol, and GlutaMAX (Gibco, Catalog Number: 35050-38) was used instead of L-glutamine for their increased stability.
T. brucei procyclic form transgenic cell line 29.13.6, Lister strain 427 (kindly provided by Prof. George Cross) was cultured at 28°C in Becton Dickinson culture flasks. Cells were grown to a maximum density of 4x10
7 cells/ml in SDM-79 medium (Invitrogen, custom made on request, Catalog Number: N/A)
22 (link)
supplemented with 15% fetal bovine serum (FBS) (PAA, Catalog Number: A11-101), GlutaMAX (Gibco, Catalog Number: 35050-38), and 15 µg/ml hemin (Sigma, Catalog Number: H9039).
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4

Maintenance and Genetic Manipulation of Trypanosoma brucei

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PCF cells of T. brucei Lister 427 29-13 (TetR T7RNAP), which co-express the tetracycline (Tet) repressor and T7 RNA polymerase, were maintained in SDM-79 medium (Invitrogen) containing 10% fetal bovine serum, 50 μg hygromycin ml−1 and 2.5 μg G-418 ml−1, at 25°C with 5% CO2 in a water-saturated incubator. Transgenic lines were generated by the limiting dilution method (Krazy & Michels, 2006 (link)) and selection with 2.5 μg phleomycin ml−1. For RNAi studies, PCF cells were grown in glucose-free medium (Wickstead et al, 2002 (link)).
BSF cells of T. brucei Lister 427 VSG 221 (TetR T7RNAP) were maintained in HMI-9 medium containing 10% fetal bovine serum, 10% Serum Plus (Sigma-Aldrich), and 2.5 μg G-418 ml−1. The cultures were maintained at 37°C with 5% CO2 in a water-saturated incubator. Transgenic lines were obtained by the limiting dilution method and selection using 2.5 μg phleomycin ml−1.
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5

Antiparasitic Bioassay of Hops Compounds

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Tbb were cultivated in HMI9 medium containing 10% heat-inactivated foetal bovine serum (FBS) (Sigma-Aldrich), 150 mM L-cysteine and 20 mM beta-mercaptoethanol at 37 °C (CO2 5%). Lmm (MHOM/BZ/84/BEL46) were cultivated in SDM-79 medium (Gibco) supplemented with 15% heat-inactivated FBS (Sigma-Aldrich) and 5 mg/L hemin at 28 °C (CO2 5%). Antiparasitic bioassays were performed as described by Bero et al. [17 (link)]. Suramin (SUR) and pentamidine (PEN) were used as positive controls respectively. The hops compounds (xanthohumol, desmethylxanthohumol, humulone, lupulone) concentration that inhibits 50% of the cell viability (IC50) was determined using GraphPad Prism, version 5.01 (GraphPad Software, San Diego, CA, USA).
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6

Differentiation of Trypanosoma Parasites

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Parasites were resuspended at 2x106/ml in SDM79 medium (GIBCO by Life technologies) containing 6mM cis-aconitate (Sigma, A3412) and were incubated at 27°C. Samples were collected for flow cytometry at 0h, 4h and 24h.
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7

Culturing T. brucei Bloodstream and Insect Forms

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T. b. brucei Lister 427 bloodstream form cells were cultured in the standard HMI-11 medium (Gibco), supplemented with 10% fetal bovine serum (Sigma-Aldrich) at 37°C, 5% CO2 [32 (link)]. Phleomycin (Invivogen) was used at 1 μg/ml, hygromycin (Sigma-Aldrich) at 1 μg/ml for bloodstream and 50 μg/ml for insect-stage, puromycin (Sigma-Aldrich) at 1 μg/ml, and blasticidin (Melford) at 5 μg/ml, as appropriate. RNAi was induced using tetracycline (Sigma-Aldrich) at 1 μg/ml. Differentiation into insect-stage cells was performed as described [59 (link)]. Briefly, 2 x 107 cells were washed in DTM medium, and resuspended in 5 ml of DTM supplemented with 15% heat-inactivated fetal bovine serum, 3 mM cis-aconitate (Sigma-Aldrich) and 3 mM sodium isocitrate (Sigma-Aldrich). Cells were cultivated for at least 7 days at 27°C prior to analysis. Established insect-stage cells were cultured in SDM-79 medium (Gibco) supplemented with 10% heat-inactivated fetal bovine serum (Sigma-Aldrich), GlutaMAX (Gibco) and 2 mg/l hemin (Sigma-Aldrich) as described [60 (link)]. Genetic manipulation was performed by electroporation in cytomix using an Amaxa nucleofector (Lonza) for BSF cells, and a Gene Pulser (BioRad) for insect-stage cells.
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8

Differentiation of Trypanosoma Parasites

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Parasites were resuspended at 2x106/ml in SDM79 medium (GIBCO by Life technologies) containing 6mM cis-aconitate (Sigma, A3412) and were incubated at 27°C. Samples were collected for flow cytometry at 0h, 4h and 24h.
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9

Characterization of ENTs from T. cruzi

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Given the extent of studies on ENT genes from T. brucei, and the organism's amenability to genetic manipulation, we used it as a surrogate system for the characterisation of ENTs from T. cruzi. Procyclic forms (PCF) of T. brucei strain Lister 427 (427WT) were maintained at 27 °C in non-vented plastic flasks with SDM-79 medium (Gibco) supplemented with 10% Foetal Bovine Serum (FBS, Gibco) and 7.5 µg/mL haemin. From 427WT the three genes making up the NT8 cluster on chromosome 11 [27, (link)28] (link) were deleted by homologous recombination, using the strategy previously reported by us for bloodstream forms [17] (link),
creating a new, procyclic TbNBT-KO cell line. The knockout was confirmed both by PCR and by phenotypical characterisation.
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10

Cultivation of Trypanosoma brucei Procyclics

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Trypanosoma brucei brucei procyclic SmOxP927 cells [50 (link)] were cultured at 28°C in SDM-79 medium (Life Technologies) supplemented with 10% fetal bovine serum (Gibco, 10270106) [51 (link)]. Transgenic cell lines with flagellar proteins KIN-E (Tb927.5.2410 [42 (link)]) and RSP4/6 (Tb927.11.4480 [52 (link)]) tagged with a 3 × HA tag were generated using the pPOT tagging approach [49 (link)]. Bloodstream Trypanosoma brucei brucei cells of the 427 cell line and promastigote Leishmania major cells were provided by the laboratory of Martin Zoltner, Charles University, Prague, Czech Republic.
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