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7 protocols using ab10901

1

Western Blot Analysis of Foxp3 Expression

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Cells and HCC tissue were collected and homogenized in pre-cooled RIPA lysis buffer. Supernatant was acquired by centrifugation at 11,347 × g for 15 min at 4°C. Subsequently; the protein concentration was detected by the BCA Protein Quantitative Assay (Sangon Shanghai Biotech Co., Ltd., Shanghai, China). A total of 40 µg protein per lane sample was separated by 10% SDS-PAGE and transferred onto polyvinylidene fluoride membranes, which were blocked in 5% non-fat milk for 1 h at room temperature. The membranes were incubated with mouse anti-human and rabbit anti-mouse GAPDH antibodies (1:1,000; cat. nos. ab10901 and ab37168; Abcam, Cambridge, MA, USA), mouse anti-human (1:1,000; cat. no. ab10901, Abcam) and rabbit anti-mouse (1:1,000; cat. no. TA346949; Beijing Zhongshan Jingqiao Biotechnology Co., Beijing, China) Foxp3 polyclonal antibody overnight at 4°C and subsequently incubated with goat anti-mouse immunoglobulin G (IgG)-horseradish peroxidase (HRP) or goat anti-rabbit IgG-HRP (1:5,000; cat. nos. ZB-2305 and ZB-2301; Zhongshan Jingqiao Biotechnology Co.) for 2 h at room temperature. Ultimately, proteins were detected with enhanced chemiluminescence reagent (EMD Millipore, Billerica, MA, USA).
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2

ChIP-qPCR Analysis of FOXP3 Binding

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The cells were immobilized in 1% formaldehyde, washed with PBS, and then suspended in SDS lysis buffer with proteinase inhibitor. The chromatin was sonicated to small sequences. The supernatant was collected after centrifuge, followed by standard ChIP analysis with antibody Anti‐FOXP3 (ab10901, Abcam). QRT‐PCR was performed to detect the abundance of relevant DNA. Primer sequences are provided in Table 4.
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3

Immunostaining of FOXP3 and MTA1 in Breast Cancer

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A total of 37 normal breast and 184 breast cancer tissue specimens were obtained from the Department of Pathology, The First Affiliated Hospital of the Fourth Military Medical University (FMMU, Shaanxi, China). Clinical staging of breast cancer was performed based on the American Joint Committee on Cancer (AJCC) staging system. Clinicopathological data were obtained from the patients’ medical records. This study was approved by our institutional research ethics committee. All specimens were immunostained for FOXP3 and MTA1 as previously described using an antibody against FOXP3 (ab10901, Abcam, 1:200 dilution) or MTA1 (#5647, CST, 1:50 dilution) (20 (link)). Sections of stained breast cancer tissue were sent to Google Biology for observation and scanning.
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4

Quantification of Mucosal Immune Proteins

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Total protein from mouse ilea was prepared using a total protein extraction kit (Applygen, Beijing, China) according to the manufacturer's instructions. Protein samples were resolved by SDS-PAGE on pre-cast 4–15% gels (Bio-Rad, Hercules, CA, USA) and transferred to polyvinylidene fluoride (PVDF) membranes (Merck Millipore, Burlington, MA, USA) and incubated overnight at 4 °C with rabbit polyclonal antibodies against Foxp3 (ab10901), RORγt (ab207082), STAT3 (ab68153), p-STAT3 (phospho S727, ab30647), STAT5 (ab16276), p-STAT5 (phospho Y694, ab32364), and β-actin (ab179467, Abcam, Cambridge, UK). Horseradish peroxidase-conjugated anti-rabbit polyclonal antibodies (Goat anti-rabbit IgG-HRP, ab6721, Abcam) were used as secondary antibodies and detected using enhanced chemiluminescence (ECL) substrate (Bio-Rad). Band densitometry was performed using Image Lab software (Bio-Rad). The relative index was represented as the ratio of the selected protein/β-actin, and was the average of three biological replicates.
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5

Detecting FOXP3 Acetylation via IP

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The acetylation of FOXP3 was detected using an IP kit (Absin, abs955-50 tests) according to the manufacturer's instructions. Briefly, the collected cells were washed with PBS and lysed with IP lysis buffer on ice for 5 min. Cells were scraped from the plate and transferred to a microcentrifuge tube. After ultrasonic disruption 3 times, the cells were subjected to centrifugation (14,000 g, 10 min) at 4°C, and the supernatant (cell lysate) was transferred to a new tube. Cell lysates (200–1000 µg total protein) were mixed with anti-FOXP3 antibody. After overnight incubation at 4°C, the protein A/G plus agarose was added to the sample and incubated on a rotator at 4°C for 2 hours. The mixture was centrifuged at 12,000 g for 1 minute to retain the precipitate, and it was washed with wash buffer. The acetylation of FOXP3 was determined by Western blotting with antiacetylated-lysine antibody (Cell Signaling Technology, 9941) and anti-FOXP3 antibody (Abcam, ab10901).
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6

Western Blot Analysis of Cell Lysates

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Cell lysates were abstracted using Thermo Scientific RIPA Buffer (Cat No. 89901) which contains 25 mmol/L Tris‐HCl (pH 7.6), 150 mmol/L NaCl, 1% Nonidet P 40 (NP‐40), 1% sodium deoxycholate, and 0.1% sodium dodecyl sulfate (SDS). Samples were centrifuged at 4°C, and the supernatants were collected. Quantified proteins were boiled with 5xloading buffer at 100°C for 5 minutes. Thirty micrograms protein was separated with 12% sodium dodecyl sulfate polyacrylamide gelelectrophoresis (SDS‐PAGE), and the separated protein was transferred to polyvinylidene fluoride (PVDF) membrane and then blocked in 5% nonfat milk medium under room temperature for about 2 hours. Primary antibodies Anti‐c‐Myc (1:1000, ab32072), Anti‐FOXP3 (1:1000, ab10901), Anti‐Bax (ab32503, 1:1000), Anti‐Bcl‐2 (1:500, ab59348), and Anti‐GAPDH (1:2500, ab9485) (Abcam, Cambridge, MA, USA) were added on the membranes and incubated overnight. After washed in Tris buffer saline Tween‐20 (TBST), HRP‐labeled goat anti‐rabbit secondary antibody IgG (1:2000, ab205718, Abcam) was added to the membranes, The mixture of primary and secondary antibodies was finally incubated for 1 hour and then washed with TBST for three times. Grayscale scanning was then used to visualize the immunoreactive proteins.
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7

Exosome Marker and Regulatory Protein Analysis

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Total proteins were extracted by RIPA lysis buffer (Beyotime, P0013B), and the concentration of the proteins was measured by a BCA kit (Beyotime, P0012). Equal amounts of protein lysates were loaded on a sodium dodecyl sulfonate-polyacrylamide gel (SDS–PAGE) and transferred to a polyvinylidene fluoride membrane. The membrane was blocked with 5% nonfat milk and incubated with antibodies at 4°C overnight. The primary antibodies used were as follows: anti-CD81 (1 : 1000, Cell Signaling Technology, 56039), anti-CD63 (1 : 1000, Abcam, ab68418), anti-CD9 (1 : 1000, Abcam, ab223052), anti-SIRT1 (1 : 1000, Abcam, ab263965), and anti-FOXP3 (1 : 2000, Abcam, ab10901). GAPDH was used as a loading control. Then, a horseradish peroxidase (HRP)-labeled secondary antibody was used to detect the specific protein bands.
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