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2 protocols using donkey anti rabbit af488

1

Detailed Immunohistochemistry Staining Protocol

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For immunohistochemistry, sections were washed in PBS and incubated for 1h at room temperature with PBS containing 10% non-immune horse serum (Sigma-Aldrich now Merck, North Ryde NSW Australia) and 0.1% Triton X-100. Sections were washed then incubated for 18–24h at room temperature with the primary antibodies listed in Table 1, diluted in hypertonic PBS (PBS containing 17g NaCl per litre). Slides were washed in PBS prior to being incubated with Alexa Fluor® (AF) secondary antibodies: donkey anti-rabbit AF488 (Jackson; Cat# 711-545-152), donkey anti-goat AF594 (Jackson; Cat# 705-585-003) or donkey anti-chicken AF647 (Jackson; Cat# 703-605-155) diluted 1:1000 in hypertonic PBS, for 2.5h at room temperature. Slides were then washed in PBS, incubated with 4,6-diamidino-2-phenylindole (DAPI) (Sigma-Aldrich), washed in PBS, and mounted in buffered glycerol. Images were captured with a Zeiss AxioImager M2 microscope and AxioCam MRm camera using Zen software (Carl Zeiss). Where required, minor adjustments were made in images using Adobe Photoshop, to ensure close matching to labelling as viewed directly down the microscope. A minimum of four non-consecutive sections per sample were examined for each antibody.
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2

Multiparametric Flow Cytometry Analysis

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Cells were stained with cell surface antibodies against the following antigens: CXCR4 (PE-conjugated; Life Technologies, MHCXCR404), cKit (APC-conjugated; Life Technologies, CD11705). For intracellular staining, cells were fixed with 1.6% paraformaldehyde at 37°C for 20 min, then permeabilized in saponin buffer (BioLegend). Intracellular antigens were probed with the following antibodies: AAT (Santa Cruz, sc-59438), AFP (Abcam, ab169552), 2C1 (a kind gift from David Lomas and Elena Miranda), and/or BiP (Invitrogen, PA1-014A), then incubated with goat anti-mouse AF647 (Jackson ImmunoResearch, 115-605-003) and donkey anti-rabbit AF488 (Jackson ImmunoResearch, 711-545-152). To assess proliferation by EdU incorporation, cells were incubated for 24 h with 10 μM EdU, then stained using the Click-iT Plus EdU Alexa Fluor 647 Flow Cytometry Assay Kit (Life Technologies, C10635) as per manufacturer’s instructions. For all flow cytometry experiments, gating was based on isotype-stained controls. Stained cells were quantified using a Stratedigm S1000EON, and data were analyzed using FlowJo (Tree Star).
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