The largest database of trusted experimental protocols

12 protocols using hifair 2 1st strand cdna synthesis kit gdna digester plus

1

Quantitative RT-PCR Analysis of Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from the different tissues and leaf axils was extracted with an RNAprep Pure Plant Kit (TIANGEN, Beijing, China) according to the kit protocol, and DNA contamination was removed with RNase-free DNase I. First-strand cDNA was synthesized with a Hifair®Ⅱ 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen, Shanghai, China) according to the kit protocol. Gene-specific primers for qRT-PCR were designed with Primer 6.0 (Supplemental Table S2). The LilyActin primer was used as an internal control [66 (link)], and SYBR® Green Master Mix (No Rox) (Yeasen, Shanghai, China) was used in the reaction mixture according to the manufacturer’s instructions. qRT-PCR was conducted using the CFX96 Real-Time System (Bio-Rad, Hercules, CA, USA), with an initial denaturation step at 95 °C for 3 min, followed by 40 cycles of denaturation at 95 °C for 10 s, annealing at 60 °C for 20 s and extension at 72 °C for 1 min. A melting curve analysis was performed for each primer pair to confirm its specificity. The 2−ΔΔCt method was used to calculate the relative expression levels of the different genes [67 (link)]. Three biological and three technical replicates were used to reduce error.
+ Open protocol
+ Expand
2

HLA Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA was isolated from the PBMC, spleen and lung using Tri‐Reagent (Trans, Beijing) following the manufacturer's protocol. Reverse transcription RNA and cDNA Synthesis with Hifair® Ⅱ 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen Biotech), PCR amplification with TransTaq DNA Polymerase High Fidelity (Yeasen Biotech), all the steps followed the manufacturer's protocol. Sequences of primers used and the predicted amplification sizes are as follows: for HLA‐DPA1‐V2 E2‐E3, 5′‐GCCTCAGTTCCTCATCAC‐3′ (forward) and 5′‐GAACGCTGGATCAAGGTAT‐3′ (reverse) 381 bp; for HLA‐DPA1‐V2 E4‐E6, 5′‐TTCCACAAGTTCCATTACCT‐3′ (forward) and 5′‐CCTAAGTCCTCTTCTGTTCA‐3′ (reverse) 303 bp; for HLA‐DPB1 E1‐E3, 5′‐CCACTCCAGAGAATTACCTT‐3′ (forward) and 5′‐GGAACCATCGGACTTGAAT‐3′ (reverse) 387 bp; for HLA‐DPB1 E3‐E6, 5′‐GTAATGGAGACTGGACCTTC‐3′ (forward) and 5′‐GACTTCAGAGCAACTTCTTG‐3′ (reverse) 386 bp; for HLA‐DOA E1‐E3, 5′‐CACCAAGGCTGACCACAT‐3′ (forward) and 5′‐CACGATGCAGATGAGGATG‐3′ (reverse) 331 bp; and for HLA‐DOA E3‐E5, 5′‐GTTCCGCAAGTTCCACTA‐3′ (forward) and 5′‐GCACTTAAAGGGCACTGA‐3′ (reverse) 336 bp.
+ Open protocol
+ Expand
3

Quantitative Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was reverse-transcribed using a Hifair® Ⅱ 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen, Shanghai, China) according to the manufacturer’s instructions. For PCR, 2 × Hieff™ PCR Master Mix (With Dye) (Yeasen, Shanghai, China) was used. The cDNA and gDNA PCR products were evaluated using 2% agarose gel electrophoresis. The qPCR was conducted using 2 × SYBR Green qPCR Master Mix (Bimake, Houston, TX, USA). GAPDH, β-actin and U1 were used as controls, and relative expression levels were calculated using the 2−ΔΔCt formula. All primer sequences are listed in Supplementary Table S1.
+ Open protocol
+ Expand
4

Strawberry Tissue Total RNA Extraction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was separately isolated from the strawberry tissue of fruits in the Total RNA Extraction Kit (Magen) by the manufacturer's protocols. The purity and integrity of the RNA were determined by gel electrophoresis and the ratios of A260/A230 and A260/A280. To generate first-strand cDNA, 400 ng of total RNA was reverse transcribed using the HifairⅡ 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen) by the manufacturer's protocols.
+ Open protocol
+ Expand
5

Quantifying Gene Expression in Mice and Worms

Check if the same lab product or an alternative is used in the 5 most similar protocols
mRNA of mice liver and worms was extracted using the Total RNA Isolation Kit (Omega), then reverse transcription to cDNA was done using the Hifair Ⅱ 1st Strand cDNA Synthesis Kit (gDNA digester plus, Yeason). Quantitative PCR was performed using the Hieff qPCR SYBR Green Master Mix (No Rox, Yeason). The primers used are listed as follows: Gapdh, forward: GTGGCAAAGTGGAGATTGTTG; reverse: AGTCTTCTGGGTGGCAGTGAT. P21, forward: AGCAAAGTGTGCCGTTGTCT; reverse: AGAAATCTGTCAGGCTGGTC. tba-1, forward: TCAACACTGCCATCGCCGCC; reverse: TCCAAGCGAGACCAGGCTTCAG. sdha-1, forward: ACCGATGGAAAAATTTACCAGC; reverse: CCATGATGAGATCTAGGGCAAA. gas-1, forward: GTCTCGATTACGTCTCCATGAT; reverse: GCTCTTGTTGGGATGTCAATAC.
+ Open protocol
+ Expand
6

Quantitative RT-PCR for Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA from the different tissue and leaf axil specimens was extracted with an RNAprep Pure Plant Kit (TIANGEN, China) according to the kit protocol, and DNA contamination was removed with RNase-free DNase I. First-strand cDNA was synthesized with a Hifair ® Ⅱ 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen, China) according to the kit protocol. Gene-specific primers for qRT-PCR were designed with Primer 6.0 (Table S2).
The LilyActin primer was used as an internal control (Xu et al., 2017) , and SYBR ® Green Master Mix (No Rox) (Yeasen, Shanghai, China) was used in the reaction mixture according to the manufacturer's instructions. qRT-PCR was conducted using the CFX96 Real-Time System (Bio-Rad, USA), with an initial denaturation step at 95°C for 3 min, followed by 40 cycles of denaturation at 95°C for 10 s, annealing at 60°C for 20 s, and extension at 72°C for 1 min. The 2 -ΔΔCt method was used to calculate the relative expression levels of the different genes (Livak & Schmittgen, 2001) . Three biological and three technical replicates were performed to reduce error.
+ Open protocol
+ Expand
7

Rice Total RNA Extraction and qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA from the shoots of rice was extracted using the RNAprep Pure Plant Kit (Tiangen, Beijing, China). The cDNA for real-time PCR was reverse-transcribed from 2 μg of total RNA using the Hifair® II 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen, Shanghai, China), and the real-time PCR was carried out using a Hieff® qPCR SYBR Green Master Mix (No Rox) (Yeasen, Shanghai, China) in Real-Time PCR machine (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions. The rice Ubi was selected as the internal control. Primers used for qRT-PCR analysis are listed in Table S3.
+ Open protocol
+ Expand
8

Cloning and Verification of Full-Length cDNA Sequences

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to previously described methods, the first strand cDNA was obtained and the full-length cDNA sequences were then cloned and verified as the method described previously (35 (link)). In details, total RNA was extracted from head kidney and liver of spotted sea bass for gene cloning using the TRIzol reagent (Ambion, USA). The first strand cDNA was reverse-synthesized from total RNA using the Hifair® II 1st Strand cDNA Synthesis Kit (gDNA digester plus) (YEASEN, China). For the 5´- and 3´-RACE, nested PCR was performed with Premix Ex Taq™ Hot Start Mix (TaKaRa, Japan). The complete coding sequences were verified by sequencing the PCR products amplified using one pair of primers located at the 5´- and 3´- untranslated region. All primers were summarized in Supplementary Table 1.
+ Open protocol
+ Expand
9

Gene Expression Analysis by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNAs were isolated from cell lines or lung tissues using Trizol reagent and then converted to cDNA by using the Hifair® II 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen, Shanghai, China). Realtime qPCR was performed by using the 2× SYBR Green qPCR Master Mix (Low ROX) (Bimake, Shanghai, China) on the LightCycler® 96 Instrument according to the manufacturer’s guidelines. The relative levels of target genes were normalized to that of GAPDH (an internal control) to calculate the 2−ΔΔCt value. The primers used in the study are listed in Supplementary Table 2.
+ Open protocol
+ Expand
10

Quantitative RT-PCR Protocol for Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol™ Reagent (Invitrogen). cDNA was synthesized using a premix Hifair® II 1st Strand cDNA Synthesis Kit (gDNA digester plus) (Yeasen) according to the manufacturer’s instructions. Quantitative real-time PCR (qPCR) was performed using the Hieff UNICON® qPCR SYBR Green Master Mix (Yeasen) and run on the Light Cycler 384 Real Time PCR System (Roche). Primers used for qPCR analysis are given in Table 1. The β-actin gene was used as an internal control for normalization of expression.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!