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2 protocols using sb204990

1

Breast Cancer Cell Line Metabolomics

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The breast cancer cell lines MCF-7, T47D, ZR-75-1, BT-474, SKBR3, and MDA-MB-231 were obtained from RIKEN Bioresource Research Center (Tsukuba, Japan). The cells were maintained in phenol red-free Dulbecco’s modified Eagle’s medium (DMEM) (Fujifilm Wako Pure Chemical Corporation, Osaka, Japan) containing 10% fetal bovine serum (Life Technologies, Carlsbad, CA, USA) and 1% penicillin/streptomycin (Fujifilm Wako Pure Chemical Corporation) at 37 °C with 5% CO2. For time-series metabolomics, 3.5 × 105 cells were seeded in 3.5 mL of medium in 60-mm-diameter dishes. After a 15-h incubation, following rapid washing twice with FBS-free media, cells were cultured in 3.5 mL DMEM lacking glucose, l-glutamine, phenol red, sodium pyruvate, and sodium bicarbonate (Sigma-Aldrich, St. Louis, MO, USA), supplemented with 20 mM glucose, 2.0 mM glutamine, 3.7 g/L sodium bicarbonate, and 10% dialyzed FBS (Life Technologies, Carlsbad, CA, USA). [U-13C5] Glutamine was used for isotope tracing experiments. The cells were treated with (Z)-4-hydroxytamoxifen (Sigma-Aldrich, St. Louis, MO, USA) in ethanol and SB204990 (MedChemExpress, Monmouth Junction, NJ, USA) or A922599 (MedChemExpress) in dimethyl sulfoxide (DMSO). In all experiments, control cell cultures were treated with an equivalent volume of the corresponding solvent.
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2

Metabolic Profiling of TGF-β1-Induced EMT

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Tan IIA (purity > 98%), [U-13C]-glucose, l-serine, l-glycine, l-lactic acid, l-alanine, pyruvate, l-malic acid, succinate, fumarate, l-glutamic acid, citric acid, α-ketoglutaric acid, l-asparatic acid, and l-proline were purchased from Shanghai Yuanye Biotechnology Co., Ltd (Shanghai, China). Recombinant human TGF-β1, Yefluor 488 EdU imaging kit, and cell cycle and apoptosis analysis kit were purchased from Yeasen (Shanghai, China). Sulforaphane (SFN), dimethyl sulfoxide (DMSO) and methoxyamine hydrochloride were purchased from Sigma-Aldrich (St. Louis, MO, USA). d-glucose was purchased from Aladdin (Shanghai, China). Dulbecco's modified Eagle medium (DMEM), minimum essential medium (MEM), and 0.25% trypsin were purchased from Gibco (Carlsbad, CA, USA). Cell counting kit-8 (CCK-8) was purchased from Vazyme (Nanjing, China). SB 204990 was purchased from MedChemExpress (Princeton, NJ, USA). BTA was purchased from Macklin (Shanghai, China). Glucose assay kit was purchased from Elabscience (Wuhan, China). Lactate assay kit was purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). N-tert-butyldimethylsilyl-N-methyltrifluoroacetamide was purchased from Acmec (Shanghai, China). Triton ×100, hoechst33342, antifade mounting medium and 4',6-diamidino-2-phenylindole (DAPI) were purchased from Beyotime (Shanghai, China).
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