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Sybr green 2 step qrt pcr kit

Manufactured by Thermo Fisher Scientific
Sourced in Finland

The SYBR Green 2-step qRT-PCR kit is a laboratory product designed for quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) analysis. The kit includes reagents necessary for the two-step process of reverse transcription and real-time PCR amplification, utilizing the SYBR Green fluorescent dye for detection.

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2 protocols using sybr green 2 step qrt pcr kit

1

Optimized qRT-PCR for Cytokine Profiling

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A kit from Qiagen (RNeasy Plus Mini Kit) was used for RNA isolation from cell cultures, and RNA quality was tested by measuring the ratio 260/280 nm in a UV-spectrophotometer. Real-time qRT-PCR analysis was optimized by SYBR Green 2-step qRT-PCR kit protocol (DyNAmo, Finnzymes, Finland). Specific primers were as follows, respectively: IL-4, sense: ATGGGTCTCAACCCCCAGCTA-3, antisense: TGCATGGCGTCCCTTCTCCT;  IL-5, sense: TGAAGGCCAGCGCTGAAGAC, antisense: GCGGACAGCTGTGTCAAGGTC; IL-13, sense: ATGAGTCTGCAGTATCCCG, antisense: CCGTGGCAGACAGGAGTGTT; IFN-γ, sense: AGCCAAGCGGCTGACTGAACT, antisense: TAAAGCGCTGGCCCGGAGT; IL-17A, sense: TCACCCTGGACTCTCCACCG, antisense: GTCCAGCTTTCCCTCCGCAT; IL-10, sense: GGCCCTTTGCTATGGTGTCCT, antisense: GTAGGGGAACCCTCTGAGCTGC; TGF-β1, sense: CCTGAGTGGCTGTCTTTTGA, antisense: CGTGGAGTTTGTTATCTTTGCTG; GAPDH, sense: CATGGCCTTCCGTGTTC, antisense: CCTGGTCCTCAGTGTAGC. The PCR was started at 95°C for 10 minutes (hot start) to activate the AmpliTaq polymerase, followed by 40 cycles of amplification (denaturation at 95°C for 15 seconds, annealing at 60°C for 1 min, extension at 72°C for 60 seconds, and plate reading at 60°C for 10 seconds). The temperature of PCR products was elevated from 65°C to 95°C at a rate of 0.2°C/1 sec, and the resulting data were analyzed by using the software provided by the manufacturer (Applied Biosystems Inc., Foster City, USA).
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2

Quantitative Analysis of Lhb Gene Expression

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Total RNA was extracted using the TRIZOL reagent (Invitrogen, USA) following the manufacturer 's protocol. cDNA was synthesized from 800 ng of the total RNA using anchored random hexamer primers and Moloney murine leukaemia virus reverse transcriptase according to the protocol of DyNAmo TM cDNA synthesis kit (Finnzymes, Finland). Real-time PCR amplification was carried out using SYBRGreen 2-step qRT-PCR kit (Finnzymes, Finland) according to the manufacturer's protocol. Relative Lhb gene expression was calculated using the comparative quantitation option of Rotorgene-Q software (Qiagen, USA). To compensate for the variation in cDNA concentrations and the PCR efficiency between tubes and endogenous control, the rat glyceraldehyde-3-phosphate dehydrogenase (rGapdh) gene was quantified in each sample and used for normalization. The average relative Lhb gene expression of the control group was set to 1.0. Pairs of primers specific for the rLhb gene and primers specific for the reference rGapdh gene were designed to span over intron sequences using the Primer3 open-source software [17] (link) (IDT PrimerQuest; Integrated DNA Technologies Inc., USA). Primer specificity was confirmed by a BLAST software-assisted search of a nonredundant nucleotide sequence database (National Library of Medicine, USA). Specific primer sequences were as follows:
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