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Pepsin solution

Manufactured by Agilent Technologies
Sourced in Denmark

Pepsin solution is a laboratory reagent containing the enzyme pepsin. Pepsin is a proteolytic enzyme that catalyzes the hydrolysis of proteins into smaller peptides. The solution is commonly used in various biochemical and analytical applications that require protein digestion or processing.

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3 protocols using pepsin solution

1

Immunohistochemical Detection of KIM-1

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Detection of KIM-1 was accomplished by modifying a published method (Humphreys et al. 2011 (link)). Formalin-fixed and paraffin-embedded kidney sections were deparaffinized and rehydrated. Antigens were retrieved by 4N HCl and pepsin solution (Dako) afterward. After peroxidase blocking, immunohistochemical detection was conducted using Dako Liquid DAB Substrate Chromogen System with primary anti KIM-1 antibody (2 ug/mL in PBS) (R&D Systems, Minneapolis, MN) and secondary goat IgG HRP-conjugated Antibody (1:100 in PBS) (R&D Systems). The proportion of positive-stained proximal tubules in outer medulla was determined under light microscopy. Data were presented as a fraction of proximal renal tubules staining positive for KIM-1 (no fewer than 200 proximal renal tubules counted per a kidney section).
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2

Quantifying Renal Cell Proliferation

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Deparaffinized and rehydrated kidney sections were immersed in 4N HCl and subsequently pepsin solution (Dako, Carpinteria, CA) for antigen retrieval and then incubated in peroxidase blocking reagent (Dako). Dako EnVision System HRP kit was used for the detection of BrdU-incorporated nuclei (monoclonal anti-bromodeoxyuridine antibody, Dako, 1:200 dilution). Data were presented as a fraction of BrdU staining-positive nuclei in the tubular epithelium of the renal cortex (no fewer than 1,000 nuclei counted per a kidney section).
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3

miR-214 FISH Localization in NPC

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Fluorescence in situ hybridization (FISH) of miR-214 was performed on 5 µm tissue sections of NPC following the manufacturer's instructions. Briefly, sections were at 59°C 2 h to attach cores to the silane-coated slide. Then, sections were de-paraffinised with xylene two times for 5 minutes each, rehydrated with ethanol (100 - 50 - 25% for 5 min each), and treated with DEPC water for 1 min. Subsequently, sections were treated with pepsin solution (1.3 mg/ml) (Dako, Glostrup, Denmark) at 37°C for 30 min. Following a post-fixation step in 4% paraformaldehyde (PFA), LNA-miR-214 detection probe (Exiqon, Vedbek, Denmark) or LNA-control (Exiqon, Vedbek, Denmark) was hybridized to the sections at 58°C for 4 hours carried out in a Hybrite (Abbott Laboratories, Shanghai, China). After post-hybridization wash, sections were incubated with anti-DIG-HRP (Roche, Shanghai, China) in a heater at 37°C for 30 min. Slides were washed by TNT buffer for 15 min at room temperature (RT) and incubated with Fluorophore TSA Reagent working solution for 10 min at RT. The slides were counterstained with 4′, 6-diamidino-2-phenylindole (DAPI) (Roche Diagnostics, Shanghai, China) and visualized the nuclei and glass mounting by fluorescence microscopy with a Jenoptik camera and VideoTesT-FISH 2.0 software (GP Medical Technologies Ltd, Beijing, China).
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