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336 protocols using glucose oxidase

1

STORM Imaging Buffer Optimization

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STORM imaging buffer for cultured cells contains 10% (w/v) glucose (Sigma-Aldrich), glucose oxidase (0.56 mg/ml; Sigma-Aldrich), catalase (0.17 mg/ml; Sigma-Aldrich), and 0.14 M 2-mercaptoethanol (βME, Sigma-Aldrich). For the formalin-fixed paraffin-embedded (FFPE) tissue section, to reduce the high background caused by the strong scattering of pathological tissue, an optical clearing process was conducted before imaging by immersing the sample in 60% (v/v) 2,2′-thiodiethanol (TDE) for 20 to 30 min to make the sample transparent (27 (link)). For the STORM imaging buffer of FFPE tissue section, 60% (v/v) TDE solution was used instead of water to match the tissue’s index and contains 10% (w/v) glucose (Sigma-Aldrich), glucose oxidase (0.56 mg/ml; Sigma-Aldrich), catalase (0.17 mg/ml; Sigma-Aldrich), 0.14 M βME (Sigma-Aldrich), and 0.2 mM cyclooctatetraene (Sigma-Aldrich). The imaging buffer was added to the sample dish right before imaging.
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2

Immunocytochemistry Protocol for Carbonic Anhydrase

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Organs were isolated from mice, fixed, and cut as described previously (50 (link)). Isolated sperm were air-dried and fixed in methanol for 15 min at room temperature.
Immunocytochemistry was performed as described previously (50 (link)). In brief, slices were blocked with PBS glucose oxidase buffer (10 mm glucose, 1 mm NaN3, and 0.4 units/ml glucose oxidase (Sigma)) and incubated with rb anti-CAII IgG (1:100 in PBS/5% BSA containing avidin 1:300) overnight at 4 °C, followed by incubation with biotinylated anti-rb IgG (1:200 in PBS/5% BSA containing biotin 1:50) for 30 min. The Vectastain® Elite ABC kit for peroxidase (Linaris, Dossenheim, Germany) was used, according to the protocol of the manufacturer, for signal enhancement. Detection was carried out with 3,3′diaminobenzidine (DAB, Sigma) as chromogen. For double immunostaining, slices were subsequently incubated with gt anti-CAIV IgG 1:100 in PBS/5% BSA overnight at 4 °C, followed by an incubation with biotinylated anti-gt IgG (1:200) in PBS/5% BSA. In this case, localization was determined with the Vectastain® ABC-AP kit (Linaris) using HistoRed as chromogen for alkaline phosphatase enzyme activity. Nuclear staining was performed with hematoxylin (Roth).
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3

STORM Imaging of tRNA^Pyl Labeled with Alexa647

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STORM images of Alexa647 labeled tRNAPyl were acquired on a Leica GSDIM microscope with a 160x/1.43 oil immersion objective using a 642 nm laser for excitation. Images were acquired in a glucose oxidase-based oxygen scavenging system buffer [40 μg/mL catalase (Sigma-Aldrich C3155), 0.5 mg/mL glucose oxidase (Sigma-Aldrich G7141), 10% glucose, 10 mM β-mercaptoethylamine (Sigma-Aldrich 411000), 50 mM Tris-HCl (pH = 8), similar to (Szymborska et al., 2013 (link))]. Images were transformed into TIF files using FIJI software (Schindelin et al., 2012 (link)) and subsequently analyzed using a customized Igor Pro software (Dedecker et al., 2012 (link)).
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4

Glucose Oxidase-Conjugated Dextran-Coated Iron Oxide Nanoparticles

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GOx was conjugated to the Dex-IONP using a modified reported technique [17 (link)–19 (link)]. 48 mg of NaIO4 (Sigma-Aldrich) was added into a solution of dextran coated iron oxide nanoparticles (1 ml of 5 mg Fe/ml) and reacted overnight at room temperature in the dark. Afterwards, the Dex-IONP was collected and washed with distilled water using ultrafiltration tubes (100 kDa). The resulting modified dextran coated iron oxide nanoparticles were suspended in 0.1 M NaHCO3, pH 9.6, and incubated with 16 mg glucose oxidase (Sigma-Aldrich) at 4 °C overnight. At the end of this period, NaBH4 (Sigma-Aldrich) was added to a final concentration of 1 mg/ml to reduce the Schiff bases formed between the dextran and glucose oxidase. After 30 min, the resulting Dex-IONP-GOx were washed with distilled water using ultrafiltration tubes (300 kDa) and stored at 4 °C for further work.
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5

MPO-Mediated Oxidation and PON1 Activity Assay

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dHDL was oxidized with a commercial preparation of MPO (#475911, MilliporeSigma) as described previously (28 (link)). Briefly, 25 μg of dHDL (1 mg/ml) was incubated with or without MPO-oxidase system (57 nM MPO, 100 μg/ml glucose, 20 ng/ml glucose-oxidase (49180, MilliporeSigma), and 0.05 mM NaNO2) in total 25 μl of the activity buffer containing 10 mM sodium phosphate (pH 7.5), 200 μM diethylenetriaminepentaacetic acid, 1 mM CaCl2 at 37 °C overnight. On the next day, half of the sample was used for Western blot analysis carried out using a monoclonal antibody specific for human PON1 and the other half used to measure PON1 lactonase activity. The samples were diluted in the lactonase assay buffer and 10 μl of 10 mM product DTNB (0.8 mM final concentration) and then 10 μl of TBBL added (1 mM final concentration). Lactonase activity was measured as change in absorbance at 405 nm, normalized to activity in absence of MPO.
Quantitation of IsoLG–Lys adducts on dHDL by IsoLG was performed as described previously (28 (link), 51 (link), 52 (link)). Briefly, dHDL with or without MPO after overnight incubation was subjected to proteolysis with Pronase and aminopeptidase M. The amount of IsoLG–lysyl–lactam was then measured by stable-isotope dilution LC/MS/MS.
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6

Colorimetric Creatinine Assay Protocol

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β-nicotinamide adenine dinucleotide phosphate (NADP+), maleimide, glucose-6-phosphate (G6P), magnesium chloride (MgCl2), diazonium salt, silicone oil, succinic acid, glucose, glucose oxidase, peroxidase-HRP, bilirubin, dyphylline, excipients, surfactants, preservatives and stabilizers were procured from MilliporeSigma (St. Louis, MO, USA). Bromocresol Green (BCG) was obtained from Affymetrix (Santa Clara, CA, USA). Creatinine kits (2-step colorimetric readout) were purchased from Abcam (Cambridge, UK). Urine calibrator samples were procured from CST Technologies (Great Neck, NY, USA).
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7

Polymer-Based Phosphorescent Glucose Sensor

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The semiconducting polymer poly(9,9-dihexylfluorenyl-2,7-diyl) (PDHF, Mw ~55,000 Da) and functional polymer poly(styrene-co-maleic anhydride) (PSMA, Mw ~1,700 Da) were purchased from Millipore Sigma. The phosphorescent dye palladium(II) meso-tetra (pentafluorophenyl) porphine (PdTFPP) was purchased from Frontier Scientific. Tetrahydrofuran (THF) solvent was purchased from Millipore Sigma. β-D-glucose, glucose oxidase (≥100,000 units/g protein), and 1-ethyl-3-(3-(dimethylamino)propyl)carbodiimide (EDC) were purchased from Millipore Sigma. HEPES and PBS buffers were purchased from Thermo Fisher Scientific. All chemical agents were used without further purification and all experiments were performed at room temperature.
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8

Electrochemical Glucose Biosensor Development

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PCL (average molecular mass: 80,000 g/mol), chloroform (purity > 99%), ethanol (99.5%), glucose oxidase (from Aspergillus niger, 145,200 units/g solid), horseradish peroxidase (297,000 units/g solid, suitable for manufacturing of diagnostic kits and reagents), trehalose dihydrate (from Saccharomyces cerevisiae, > 99%,) and 3,3’,5’,5’-tetramethylbenzidine (purity > 99%) (TMB) were purchased from Merck KgaA, Corp. (Tokyo, Japan). D (+)-Glucose was purchased from Hayashi Pure Chemical Ind., Ltd. (Osaka, Japan). A phosphate buffer solution was purchased from Nacalai Tesque, Inc. (Kyoto, Japan). A high-voltage power supply (model HJPQ 30P1, Matsusada Precision, Japan) was used. The syringe pump was purchased from KD Scientific, Inc. (Holliston, MA) (model KDS 200).
A syringe of 5 mL with a metallic blunt tip of 18 gauge was used. Air plasma treatment was performed using a plasma generator (Sakigake YHS-R, Japan), and the water contact angle was measured using a solid-liquid interface analyser DropMaster 300 (Kyowa Interface Science Co., Ltd., Japan).
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9

Immunohistochemical Analysis of β-Galactosidase

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Sections were washed 3 times in 1× TBS and the endogenous peroxidase activity was blocked with 0.3% H2O2. Blocking buffer contained 2% bovine serum albumin and 0.3% Triton X-100 (both purchased from Merck KGaA). Then sections were incubated overnight at RT with polyclonal chicken anti-β-galactosidase (ab9361, RRID: AB_307210, Abcam, Cambridge, UK), diluted 1:4000 in blocking buffer. After TBS washes, sections were incubated for 2 h at RT with peroxidase conjugated donkey anti-chicken IgG (Jackson ImmunoResearch Laboratories Inc., West Grove, PA, USA), diluted 1:500 in blocking buffer. Visualization were performed using nickel(II) sulfate hexahydrate/3,3′-diaminobenzidine tetrahydrochloride (Merck KGaA) as chromogen and glucose oxidase (Merck KGaA) [49 (link)]. Sections were mounted onto gelatinized slides, allowed to dry overnight, transferred into ascending ethanol solutions (50%, 70%, 96%, absolute for 5 min, respectively), then cover slipped with PERTEX mounting medium. Brightfield images of PrL, BMA, CeC, BLA, layer V of the primary S1, CA1 and MHb, according to Paxinos and Franklin [47 ] were acquired using a Nikon Microphot-FXA microscope (Nikon, Tokyo, Japan), then contrasted using Photoshop CS6 (Adobe, San José, CA, USA).
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10

Fluorescent Silica Nanoparticles for EGFR Binding

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Fluorescent silica NPs (Sicastar®-GreenF) with surface carboxylic acid groups (COOH) of 100 nm radius were purchased from Micromod Partikeltechnologie GmbH. Cetuximab antibody (Erbitux, Merck) was kindly provided by Prof. Marteen Merkx (Eindhoven University of Technology). Human EGFR protein (Fc tag, ACROBiosystems EGR-H5252), Zeba™ desalting columns (7 K MWCO), Alexa Fluor™ 647 NHS ester and HEPES buffer (1 M) were purchased from Thermo Fisher Scientific. Phosphate buffered saline (PBS) tablets, 1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC), tris(hydroxymethyl)-amino-methane (tris base), bovine serum albumin (96% purity), cysteamine, catalase from bovine liver, glucose oxidase, sodium bicarbonate and 4-morpholineethanesulfonic acid (MES) were purchased from Merck Life Science. CF®680 NHS ester was obtained from VWR International BV.
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