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174 protocols using glucose 6 phosphate dehydrogenase

1

Spectrophotometric UDPG Pyrophosphorylase Activity Assay

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UDPG pyrophosphorylase (1) activity was analyzed using the spectrophotometric method using a coupled enzyme assay containing phosphoglucomutase (2) and glucose-6-phosphate dehydrogenase (3) according to the following equations:


The reaction mixture in the total volume of 1.0 mL contained 0.2 M HEPES–NaOH, pH 7.4, 6 mM MgCl2, 2 mM sodium pyrophosphate, 10 mM UDPG, 0.4 mM NADP +, 3 U glucose-6-phosphate dehydrogenase (Sigma-Aldrich, Saint Louis, MO, USA), 3 U phosphoglucomutase (Sigma-Aldrich) and 0.26 U/mg IAGlc synthase. The change of the NADPH/H+ absorbance was monitored at 340 nm using a Shimadzu UV-160A spectrophotometer (Shimadzu, Japan). The enzyme activity was calculated using the absorption coefficient 6220 M−1 cm−1 for NADH/H+.
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2

Enzymatic Analysis of Sugars in Tomato

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To determine the levels of glucose, fructose, and sucrose, an enzymatic method was used as described previously [40 (link)]. An amount of 25 mg of lyophilized tomato fruits was mixed with 500 µL 80% (v/v) aqueous ethanol and incubated in a thermomixer at 1000 rpm at 80 °C for 1 h, followed by cooling on ice and centrifugation at 14,000× g at 4 °C for 5 min. The supernatant was collected and transferred to a new tube for evaporation to dryness (60–78 °C). The residue was dissolved in 250 µL water and subsequently used for sugar analysis in three technical replicates. Reactions were conducted in a 96-well plate with reaction mixtures each containing 100 µL diluted supernatant (7%) and 0.1 U glucose-6-phosphate dehydrogenase (Merck, Darmstadt, Germany) diluted in 100 µL buffer (100 mM Imidazole/HCl, pH 6.92, 10 mM MgCl2, 2 mM ATP, 4 mM NAD). The reaction was performed in a microplate reader (Sunrise) and recorded at 340 nm wavelength for 3 min. Subsequently, 0.1 U hexokinase (Merck) was added to determine glucose level. The contents of fructose and sucrose were determined in the same way using 0.2 U phosphoglucose isomerase (Merck) and 1 U invertase (Merck), respectively. Levels were calculated using glucose, fructose, and sucrose as standards [23 (link)].
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3

Quantifying Lactate and Glucose Levels

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L-lactate concentration was determined according to a previously published protocol 30 . In brief, samples in 96-well microtiter plates were mixed with reaction buffer (0.1 M citric acid, 10 mg/mL BSA, 0.1% CaCl2; pH 6.0) containing 0.25 units/mL lactate oxidase (Sigma-Aldrich, #L9795), 0.25 units/mL horseradish peroxidase (Sigma-Aldrich, #P8375) and 500 µM ABTS (Merck Millipore, #11204521001). After incubation for 1 h at room temperature, absorbance at 405 nm was determined.
Alternatively, lactate concentration in cell culture supernatants or mouse brain tissue homogenates was determined using the Colorimetric L-lactate assay kit (Merck Millipore, #MAK329) according to the supplier's protocol.
Glucose concentration in cell culture supernatants was determined according to a previously published protocol 31 (link). In brief, samples in 96-well microtiter plates were mixed with reaction buffer (177 mM Tris HCl, 10 mM MgCl2; pH 7.8) containing 5 mM ATP (Merck Millipore, #10127523001), 2.5 mM nicotinamide adenine dinucleotide phosphate (NADP; Carl Roth, Karlsruhe, Germany, #AE13.1), 3 U/mL hexokinase (Merck Millipore, #11426362001), 3.4 U/mL glucose-6-phosphate dehydrogenase (Merck Millipore, #10165875001). After incubation for 1 h at room temperature, absorbance at 340 nm was determined.
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4

Penitrem A Enzymatic Assay

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Crystalline penitrem A (≥95%), magnesium chloride hexahydrate, glucose-6-phosphate sodium salt, β-nicotinamide adenine dinucleotide phosphate sodium salt (NADP+), β-nicotinamide adenine dinucleotide phosphate reduced tetrasodium salt (NADPH), glucose-6-phosphate dehydrogenase, HEPES buffer and ammonium formate were from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany). Water and acetonitrile (MeCN) for LC–MS were of Optima grade (Thermo Fisher Scientific, Waltham, MA, USA). Methanol (MeOH) and MeCN for other purposes than LC–MS were of gradient quality and from Romil (Cambridge, UK).
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5

Tenatoprazole metabolic pathways in human liver microsomes

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Tenatoprazole (as a racemic mixture) was obtained from Abcam Biochemicals. Omeprazole (racemic mixture), oxidized nicotinamide adenine dinucleotide phosphate (NADP+), glucose 6-phosphate, and glucose 6-phosphate dehydrogenase were obtained from Sigma-Aldrich (Saint Louis, MO, USA). Tenatoprazole sulfide was purchased from 4Chem Laboratory (Suwon, Gyeonggi-do, Republic of Korea). 5′-OH tenatoprazole and 5′-OH tenatoprazole sulfide were prepared as described previously [7 (link)]. The other chemicals used in this study were of the highest purity grade commercially available.
Pooled liver microsomes from human samples were obtained from ThermoFisher Scientific (Waltham, MA, USA). Recombinant human P450s were heterologously expressed in Escherichia coli with a pCW vector containing human P450 cDNA (CYP 3A4, 2C9, 2C19, 1A2, 1B1, 2E1, 2D6, and 2A6) and rat NADPH-P450 reductase (CPR) [12 (link),13 (link),14 (link),15 (link),16 (link),17 (link),18 (link)]. Membrane fractions expressing both P450 and CPR of E. coli were prepared as described previously [12 (link),13 (link)] and were used for the catalytic activity assays.
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6

Quantitative Analysis of Antioxidant Metabolites

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Butylated hydroxytoluene [BHT, 2,6-di-tert-butyl-4-methylphenol,], butylated hydroxyanisole [BHA, 2(3)-tert-butyl-4-methoxyphenol (90%/10%)], tert-butylhydroquinone [TBHQ, 2-tert-butylbenzene-1,4-diol], 2,6-di-tert-butylphenol [DBP, 2,6-bis(tert-butyl)phenol], BHT acid [3,5-Di-tert-butyl-4-hydroxybenzoic acid], glutathione (GSH), uridine 5′-diphosphoglucuronic acid (UDPGA), 3′-phosphoadenosine-5′-phosphosulfate (PAPS), nicotinamide adenine dinucleotide phosphate (NADP + ), glucose-6-phosphate, MgCl2 and glucose-6-phosphate dehydrogenase, as well as HPLC-grade acetonitrile (ACN), methanol and formic acid were all purchased from Sigma-Aldrich (Oakville, ON, Canada). BHT-d3 [2,6-di-tert-butyl-4-methyl-d3-phenol] and BHT-d21 [2,6-di-(tert-butyl-d9)-4-methylphenol-3,5-d2,OD] were purchased from CDN Isotopes (Pointe-Claire, QC, Canada). BHT-d20 was created by heating the BHT-d21 for 2 h at 60 °C. Human and rat liver microsomes (HLM and RLM) and human and rat liver S9 (HS9 and RS9) fractions were purchased from Corning (Corning, NY, USA). Ultrapure water was from a Millipore Synergy UV system (Billerica, MA, USA).
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7

Mitochondrial Respiration Assay Protocol

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The respiration buffer (RB) consisted of 240 mM mannitol, 100 mM KCl, 1mM EGTA, 20 mM MgCl2, 10 mM KH2PO4, and 0.1% (w/v) fatty acid free BSA (pH 7.2). 20 mM Succinate, pH 7.2 with KOH (S3674) was used as a substrate in all experiments. The assay readout consisted of 5 mM glucose, 2.5 U/ml hexokinase (Sigma H4502), 2.5 U/ml glucose-6-phosphate dehydrogenase (Sigma G8529), and 1.6 mM NADP+(Sigma N8035). 20 μM P1,P5-di(adenosine-5) pentaphosphate (AP5A) was used to inhibit adenylate kinase which could otherwise convert 2 ADP → AMP + ATP. The assay reagents were prepared at 2 × in RB and 100 μL was dispensed into each well of UV transparent 96 well plate. 50 μL of 4x succinate was then added, followed by 25 μL of 8x mitochondria. The plate was incubated at 25 °C for 5 min to allow the mitochondria to energize. The reaction was initiated by the addition of 25 μL of 8x ADP using a multichannel pipette to yield a total volume in the well of 200 μL. Absorbance was monitored at 340 nM using a SpectraMax Plus 384 plate reader (Molecular Devices) set at 25 °C using Softmax Pro 4.3 acquisition software.
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8

Comprehensive Reagents for Biochemical Protocols

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Chemicals used in the present study were of highest purity/analytical grade. Sodium chloride, potassium chloride, sodium carbonate, sodium bicarbonate, disodium hydrogen phosphate, sodium dihydrogen phosphate, triton X-100, sodium hydroxide, ethylenediamine tetraacetic acid, reduced Glutathione, sodium azide, ethanol, 3-[N-morpholino] propane sulfonic acid (MOPS buffer), and magnesium chloride were purchased from HIMEDIA Chemicals (Mumbai, India). Glutathione, Folin-Ciocalteu's reagent, glucose-6-phosphate dehydrogenase, glucose-6-phosphate, nicotinamide adenine dinucleotide phosphate (reduced and oxidized), TRI reagent, formamide, trisodium citrate, sodium acetate, and ethidium bromide were purchased from Sigma Aldrich Chemicals (St Louis, MO). One-step reverse transcriptase polymerase chain reaction (RT-PCR) kit and DNA molecular weight markers (100-600 bp) were obtained from Qiagen India Private Limited (New Delhi, India), and PCR primers were obtained from Eurofins Genomics India Private Limited (Bengaluru, India).
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9

Evaluating Compound Interactions in Cells

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β-lapachone was obtained from Southeast Pharmaceuticals, Inc. (Jiangsu, China). Propofol, N-acetyl cysteine (NAC), dicoumarol (DIC), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), glucose 6-phosphate, glucose 6-phosphate dehydrogenase, β-nicotinamide adenine dinucleotide phosphate (NADP), uridine 5’-diphosphate-glucuronic acid (UDPGA), D-saccharic acid 1,4-lactone, β-D-glucuronidase and chlorzoxazone, were all purchased from Sigma Aldrich. Diazepam was obtained from the National Institute for the Control of Pharmaceutical and Biological Products (Beijing, China).
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10

Cytochrome c Reductase Enzyme Assay

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Dichlorophenolindophenol (DCPIP) and potassium ferricyanide were from Fluka (Buchs, Switzerland). L-Arginine, ampicillin, kanamycin sulfate, chloramphenicol, cytochrome c (horse heart), isopropyl β-D-1-thiogalactopyranoside (dioxane-free), thiamine, glucose 6-phosphate, glucose 6-phosphate dehydrogenase, NADP+ and NADPH were obtained from Sigma–Aldrich (St. Louis, MO, United States). Phenylmethanesulfonyl fluoride was purchased from Gerbu Biotechnik GmbH (Heidelberg, Germany). Bacto agar, Bacto peptone and Bacto tryptone were obtained from BD Biosciences (San Jose, CA, United States). Bacto yeast extract was obtained from Formedium (Norwich, England). A polyclonal antibody from rabbit serum raised against recombinant human CPR obtained from Genetex (Irvine, CA, United States) was used for immunodetection of the membrane-bound CPR, while the respective antibody used the in the case of the soluble form of the enzyme was obtained from Thermofisher Scientific (Waltham, MA, United States).
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