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11 protocols using 8 bromoadenosine 3 5 cyclic monophosphate

1

Directed Differentiation of iPSCs into Endoderm

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Induced pluripotent stem cells were seeded onto flasks coated with Matrigel at a density of 0.5–1 × 104 cells per cm2 in primed hiPS cell medium (KSR/FGF2). After 48 h, the medium was changed daily with RPMI-based medium with B27 supplement (Gibco, ThermoFisher Scientific), 100 ng ml−1 activin A (Peprotech), 1 µM CHIR99021, 1% penicillin and streptomycin for 3 days. On days 4–8, the medium was changed daily with DMEM/F12-based medium with N2 (Gibco, ThermoFisher Scientific) and B27 supplements, 0.05 mg ml−1 ascorbic acid (Sigma-Aldrich), 0.4 mM monothioglycerol (Sigma-Aldrich), 2 µM dorsomorphin (Peprotech), 10 µM SB-431542 (Miltenyi Biotec), 1% penicillin and streptomycin. On days 9–12, the medium was changed daily with DMEM/F12-based medium with B27 supplement, 0.05 mg ml−1 ascorbic acid, 0.4 mM monothioglycerol, 20 ng ml−1 BMP4 (Peprotech), 0.5 µM all-trans retinoic acid (Sigma-Aldrich), 3 µM CHIR99021, 1% penicillin and streptomycin. On days 12–20, the medium was changed every other day with DMEM/F12-based medium with B27 supplement, 0.05 mg ml−1 ascorbic acid, 0.4 mM monothioglycerol, 10 ng ml−1 FGF10 (Stemcell Technologies), 10 ng ml−1 FGF7 (Peprotech), 3 µM CHIR99021, 50 nM dexamethasone (Sigma-Aldrich), 0.1 mM 8-bromoadenosine 3′,5′-cyclic monophosphate (Sigma-Aldrich), 0.1 mM 3-isobutyl-1-methylxanthine (Sigma-Aldrich), 1% penicillin and streptomycin.
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2

Endometrial Organoid Culture and Maturation

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hPSCs-derived MDLCs were dissociated with ReleSR solution for 8 min in 37 °C incubator, centrifuged, and resuspended at a concentration of 5 × 106 cells/ml in DMEM/F12 medium (Gibco), mixed with Growth Factor Reduced Matrigel (Corning) at a ratio of 1:1 (vol:vol), dripped 20 μl/drop on the low adhesion plate (Corning), after gelatinisation at 37 °C for 30 min, added endometrium expansion medium (ExM)31 (link) and gently scraped drops to 3D suspension culture. After 1 week, cell aggregates spheres were primed stimulated with 10 nM E2 (β-oestradiol, Sigma) in ExM for an additional of 1 week. Then the medium was replaced with 10 nM E2 + 1 μM P4 (progesterone, Sigma) + 1 μM cAMP (8-bromoadenosine 3’,5’-cyclic monophosphate, Sigma) in ExM and cultured for another 2 weeks in order to induced organoid maturation. The culture was continued for another two cycles (1 cycle: ExM for 1 week + ExM + E2 for 1 week + ExM + E2 + P4 + cAMP for 2 weeks) to evaluate organoids in long-term culture. The cell source of primary endometrial cells-derived organoids was from the non-pathological part of endometrium from hysterectomy due to leiomyoma in patient, which was approved by the ethical committee of the first affiliated hospital, school of medicine, Zhejiang university (ethics approval No. 2018-113)42 (link).
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3

Nucleoside and Nucleotide Quantification

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Acetonitrile, methanol, n-butanol, and ethyl acetate were of the HPLC grade, and guanine, adenine, inosine, guanosine, and 8-bromoadenosine-3′,5′-cyclic monophosphate standards applied in the analysis of nucleosides; nucleotides were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Oil Red O Staining of Nematodes

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Oil Red O staining was performed as described [3 (link)]. For Oil Red O experiments in which animals were treated with a non-hydrolyzable cAMP analogue, animals were added to plates containing either M9 vehicle or 20, 200, or 500μM 8-Bromoadenosine 3′,5′-cyclic monophosphate (Sigma Aldrich). For Oil Red O experiments in which animals were treated with ascaroside ascr#3, animals were added to plates containing either ddH2O vehicle or 80nM ascr#3. Within a single experiment, roughly 3500 animals were fixed and stained, 100 animals were visually inspected on slides, following which 15–20 animals were imaged for each genotype/condition. All experiments were repeated at least 3 times. Wild-type and gpa-3 mutants were included as controls for each experiment.
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5

Endometrial Cells Decidualization Assay

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From the same group, dealt in the previous sub-section, the first-generation endometrial cells were selected once it was found to be in good growth condition. Then, the cells were inoculated in 6-well plates with each well containing 5 × 105 cells. After the cell growth and the fusion accomplishing 60–70%, all the three groups such as Aa, Ab and B were supplemented with decidualization medium i.e., 2% fetal bovine serum medium +1uM Progesterone [Progesterone, V900699, Sigma] +10 nM 17-β estradiol [β-Estradiol, E110145, Aladdin] + 0.5 mM 8 -Br-cAMP [8-Bromoadenosine 3′,5′-cyclic monophosphate, B5386, Sigma]. After 72 h of culture, the researchers observed the morphology of the decidual-like cells using an inverted microscope and captured its images for preservation. Then, the cells were made to undergo qRT-PCR and Wb detection.
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6

Regulatory Mechanisms of Gene Expression

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Deferoxamine, Forskolin, 8-bromoadenosine 3′,5′-cyclic monophosphate (cAMP), phorbol 12-myristate 13-acetate (PMA), COCl2, thapsigargin (Tg), and staurosporine were purchased from Sigma-Aldrich (St. Louis, MO, USA). Gö6983 was obtained from Abcam (Cambridge, UK), and mithramycin-A was purchased from Cayman Chemicals (Ann Arbor, MI, USA). Expression plasmids of wild type Sp1 and functionally inactive mutant Sp1, as previously reported [86 (link)], were purchased from Addgene, Watertown, MA, USA, (#12098 and #12097, respectively) and sub-cloned to pcDNA3 vector. Catalytically active mutant isoforms plasmids of PKC family were kindly donated by Professor, Jae-Won Soh (Inha University, Incheon, Korea). Details of the PKC mutant isoforms were previously published [23 (link)].
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7

Directed Differentiation of iPSCs into Endoderm

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Induced pluripotent stem cells were seeded onto flasks coated with Matrigel at a density of 0.5–1 × 104 cells per cm2 in primed hiPS cell medium (KSR/FGF2). After 48 h, the medium was changed daily with RPMI-based medium with B27 supplement (Gibco, ThermoFisher Scientific), 100 ng ml−1 activin A (Peprotech), 1 µM CHIR99021, 1% penicillin and streptomycin for 3 days. On days 4–8, the medium was changed daily with DMEM/F12-based medium with N2 (Gibco, ThermoFisher Scientific) and B27 supplements, 0.05 mg ml−1 ascorbic acid (Sigma-Aldrich), 0.4 mM monothioglycerol (Sigma-Aldrich), 2 µM dorsomorphin (Peprotech), 10 µM SB-431542 (Miltenyi Biotec), 1% penicillin and streptomycin. On days 9–12, the medium was changed daily with DMEM/F12-based medium with B27 supplement, 0.05 mg ml−1 ascorbic acid, 0.4 mM monothioglycerol, 20 ng ml−1 BMP4 (Peprotech), 0.5 µM all-trans retinoic acid (Sigma-Aldrich), 3 µM CHIR99021, 1% penicillin and streptomycin. On days 12–20, the medium was changed every other day with DMEM/F12-based medium with B27 supplement, 0.05 mg ml−1 ascorbic acid, 0.4 mM monothioglycerol, 10 ng ml−1 FGF10 (Stemcell Technologies), 10 ng ml−1 FGF7 (Peprotech), 3 µM CHIR99021, 50 nM dexamethasone (Sigma-Aldrich), 0.1 mM 8-bromoadenosine 3′,5′-cyclic monophosphate (Sigma-Aldrich), 0.1 mM 3-isobutyl-1-methylxanthine (Sigma-Aldrich), 1% penicillin and streptomycin.
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8

In Vitro Signaling Pathway Modulation

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The following drugs were used for in vitro experiments: Isoproterenol (1 μM for 72–96 h, depending on the assay; Sigma-Aldrich, #I6504), 8-bromoadenosine 3′,5′-cyclic monophosphate (30 μM, Sigma-Aldrich, #B5386) as a cAMP analog, and H89 dihydrochloride (1 μM, Tocris, #2910) as a PKA inhibitor.
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9

Decidualization of human embryonic stem cells

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hESCs were cultured in C-medium at 37 °C, 5% C02, and atmospheric oxygen concentrations. After reaching confluency, hESCs were passaged to start decidualization. In single wells of 48-well plates, 30,000 non-decidualized hESCs were seeded and decidualized for 5 consecutive days in DMEM/F12 phenol red-free medium supplemented with 10% heat-inactivated charcoal-stripped FCS (Thermo Fisher Scientific, Waltham, MA, USA), 0.5 mM 8-bromoadenosine 3′,5′-cyclic monophosphate (Sigma-Aldrich, Saint Louis, MO, USA), 1 μM medroxyprogesterone acetate (Sigma-Aldrich, Saint Louis, MO, USA), and 1% penicillin/streptomycin (D-medium). After six passages, new hESCs were isolated.
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10

Alveolar Epithelial Differentiation Protocol

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Four days after passaging, DAECs in co-culture were treated with small molecules and growth factors to induce differentiation toward alveolar epithelial cells: 3 μM CHIR99021 (Merck Millipore)/10 ng/ml keratinocyte growth factor (Peprotech)/100 μM 3-isobutyl-1-methylxanthine (Sigma-Aldrich)/100 μM 8-bromoadenosine 3′,5′-cyclic monophosphate (Sigma-Aldrich)/25 nM dexamethasone (Sigma-Aldrich)/10 ng/ml fibroblast growth factor-10 (Peprotech) [22 (link)] and 20 μM DBZ. Three days later cells were separated from feeders and subjected to downstream experiments. For further details see Supplementary Materials and Methods.
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