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7 protocols using goat iba 1

1

Dual Immunofluorescence Analysis of Caspase-8 and Iba-1 in SAH

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Double immunofluorescence staining was conducted as described previously (Xie et al., 2018). At 24 hours after SAH, rats were deeply intraperitoneally anesthetized with 10% chloral hydrate. Then, rats were transcardially perfused with cold phosphate-buffered solution (PBS) followed by 10% paraformaldehyde. The whole brains were isolated and fixed in 10% paraformaldehyde for 24 hours then in 30% sucrose solution for 72 hours. Coronal brain sections (10 μm) were sectioned and permeabilized with 0.3% Triton X-100 in PBS for 30 minutes. Blocking was performed by incubating the sections with 5% donkey serum for 1 hour. Primary antibodies against caspase-8 (rabbit, 1:200, Abcam, Cambridge, UK) and ionized calcium binding adaptor molecule 1 (Iba-1; goat, 1:200, Abcam) were added to the sections and incubation occurred overnight at 4°C. After washing with PBS, the sections were then incubated with donkey anti-rabbit secondary antibodies (1:200, Santa Cruz Biotechnology, Dallas, TX, USA) at room temperature for 2 hours. Brain slices were visualized using a fluorescence microscope (Olympus, Tokyo, Japan).
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2

Quantifying Brain Infarct Volume

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The brain infarct volume were evaluated by cresyl violet staining. A series of 20µm-thick coronal sections with an interval of 200µm between each section were cut and mounted on slides. Following xation, sections were stained using 1% cresyl violet (Sigma) for 30 min at room temperature, and then processed by a microscope (Olympus) and assessed by Image J software. Infarct volume was calculated by subtracting the volume of intact area in the ipsilateral hemisphere from the whole volume of the contralateral hemisphere. For immuno uorescent staining of microglia and neuronal markers, the slides were blocked with 10% bovine serum albumin (BSA), and incubated with primary antibodies at the following dilutions: Iba-1(goat, 1:200, Abcam) and Neuron (rabbit, 1:500, Abcam). Nuclei staining with DAPI was applied for counterstaining. The immuno uorescent staining was visualized with a uorescence microscope (Olympus IX53) and analyzed by Image J.
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3

Immunostaining of Brain Sections

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After cryosection, 2 μm thick brain sections were mounted onto glass slides. Sections were washed with PBS (pH 7.4), followed by antigen retrieval using sodium citrate buffer, pH 6, at 95°C for 25 min in a water bath. Nonspecific staining in sections was blocked using 10% donkey serum in 0.1% Tween 20-PBS for 1 h at room temperature. Primary antibodies were added overnight at a dilution of 1 : 350 for goat Iba-1 (Abcam), 1 : 1,000 for rabbit MMP-2 (Abcam) at 4°C. Alexa 488-conjugated donkey anti-goat IgG (1 : 200, Jackson Lab, Suffolk, United Kingdom) or Cy3-conjugated donkey anti-rabbit IgG (1 : 200, Jackson Lab) was subsequently applied. The nuclei were counterstained with DAPI (Sigma-Aldrich). Images were taken using a microscope (Axio Imager Z1, Carl Zeiss, China). This part was similar with the methods of Hu et al. [32 (link)].
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4

Immunohistochemical Analysis of NLRP3 Inflammasome

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Twenty μm thick coronal sections were washed with PBS and 0.4% Triton-X PBS for 20 minutes. The sections were then blocked with 10% normal donkey serum for 1 hour at room temperature in PBS containing 0.1% Triton X-100, followed by incubation with primary antibody for 1–3 nights at 4°C in the same buffer. Primary antibodies used for this study included rabbit-NLRP3 (Santa-Cruz Biotechnology, sc-66846), rabbit-ASC (Santa-Cruz Biotechnology, sc-22514-R), goat-cleaved caspase-1 (Santa-Cruz Biotechnology, sc-22165), rabbit-IL-1β (Abcam, ab9722), goat-Iba1 (Abcam, ab5076), rabbit-P2X7 receptor (Sigma, P8232), and mouse-NeuN (Millipore, MAB377). After primary antibody incubation, sections were washed for 3 × 10 minutes at room temperature (RT), followed by incubation with the appropriate secondary antibody: Alexa-Fluor488/568/647 donkey anti-rabbit/anti-mouse/anti-goat (Invitrogen) RT/1 hour. Sections were then washed with PBS containing 0.1% Triton X-100 for 3 × 10 min, followed by 2 × 5 min with 1x PBS and briefly with water. The sections were then mounted with water-based mounting medium containing antifading agents and observed using confocal microscopy. All images were captured on a confocal laser microscope (Carl Zeiss, Germany) using the Zen software at 40x magnification and 50 μm scale bar.
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5

Spinal Protein Expression Analysis

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Western blot analyses were performed on L4/5 spinal ipsilateral dorsal quadrants, as previously described.23 (link),26 (link) Primary antibodies and dilution ratios used were: rabbit P2X4R 1:400 (Alomone Labs, Jerusalem, Israel), rabbit p38 1:1000 (Cell Signaling, Danvers, MA), rabbit phospho-p38 1:1000 (Cell Signaling), rabbit p65/NFκB 1:500 (Merck Millipore, Billerica, MA), rabbit NLRP3 1:500 (LifeSpan Biosciences, Seattle, WA), guinea pig GLT-1 1:5000 (Merck Millipore), goat Iba1 1:1000 (Abcam, Cambridge, MA), rabbit CD11b 1:500 (Abcam), rabbit ATF3 1:1000 (Santa Cruz Biotechnology, Dallas, TX). Mouse β actin 1:100,000 (Sigma) was used against loading control protein. Secondary antibodies used were: Goat anti-mouse IRDye 680RD 1:15,000 (LI-COR Biosciences, Lincoln, NE), goat anti-rabbit IRDye 800CW 1:15,000 (LI-COR Biosciences), donkey anti-guinea pig IRDye 800CW 1:15,000 (LI-COR Biosciences), and donkey anti-goat IRDye 800CW 1:15,000 (LI-COR Biosciences). Bands were quantified using Image Studio (LI-COR Biosciences).
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6

Immunofluorescence Staining of Glioma Tissue

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Resected human glioma tissue and mouse brains were prepared as previously described21 (link). After cryosection, 16 µm-thick brain sections were mounted onto glass slides. Sections were then washed with PBS (pH 7.4), followed by antigen retrieval using sodium citrate buffer, pH 6, at 95°C for 25 min in a water bath. Nonspecific staining in sections was blocked using 10% donkey serum in 0.1% Tween 20-PBS for 1 h at room temperature. Primary antibodies were added overnight at a dilution of 1:350 for goat Iba-1 (Abcam), 1:1000 for rabbit MMP-9 (Abcam) at 4°C. Alexa 488-conjugated donkey anti-goat IgG (1:200, Jackson Lab, Suffolk, United Kingdom) or Cy3-conjugated donkey anti-rabbit IgG (1:200, Jackson Lab) were subsequently applied. The nuclei were counterstained with DAPI (Sigma-Aldrich). Images were taken using a confocal microscope (TCS SP5, Leica, Wetzlar, Germany) with 20X, 40X, or 63X oil objectives. Iba-1 positive labeled cells were counted using Image J software (NIH, Bethesda, USA).
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7

Immunopanning and Immunocytochemistry of Cells

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Cultured cells were fixed with 4% paraformaldehyde for 10 min at room temperature 24 h after immunopanning and then permeabilized and blocked with 10% goat serum, 0.2% TritonX-100. Cells were labeled using antibodies to goat Iba1 (Abcam) and mouse S100 (Sigma s2532) as well as Cellmask (ThermoFisher H34558) and DAPI.
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