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23 protocols using olig2

1

Antibody Validation for Cell Signaling

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The following antibodies and dilutions were used: Sox9 (#ab185966, abcam, Cambridge, UK) 1:5000 for western blot (WB); 1:500 for immunofluorescence (IF); Sox2 (#MAB2016, R&D Systems, Wiesbaden, Germany) 1:1000 (WB) and 1:250 (IF); Olig2 (#AF2418, R&D Systems) 1:10,000 (WB) and 1:5000 (IF); GAPDH (#CB1001, Calbiochem, Darmstadt, Germany) 1:20,000; CHK1 (#2360, Cell Signaling Technologies (CST), Frankfurt am Main, Germany) 1:1000; phosphoCHK1 (CST #2348), 1:1000; CHK2 (CST #2662S) 1:1000; Survivin (R&D #AF886) 1:1000; TP53BP1 (NB #100-304, Novus Biologicals, Wiesbaden, Germany) 1:1000; γH2AFXSer139 (#05-636, clone JBW301, Merck Millipore, Darmstadt, Germany) 1:1000; F(ab′)2-Goat anti-Rabbit IgG (H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 (A-11070, Thermo Fisher) 1:500; F(ab′)2-Goat anti-mouse IgG (H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 (A-11020, Thermo Fisher) 1:500; F(ab′)2-donkey anti-goat IgG (H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 (A-11055, Thermo Fisher) 1:500; donkey anti-goat IgG (sc2042, Santa Cruz, Dallas, TX, USA) 1:10,000.
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2

Optic Nerve Immunohistochemistry Protocol

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Optic nerve sections were incubated with blocking solution (0.5% Triton-X, 10% donkey serum, 1% BSA) for one hour, then with the primary antibodies for one hour at room temperature. Primary antibodies used were: HA (1:500; BioLegend), SOX9 (1:100; R&D Systems), IBA1 (1:400; Wako), OLIG2 (1:100; R&D Systems), NG2 (1:400; EMD Millipore), LCN2 (1:400; R&D Systems). They were then washed in PBS (pH 7.4; 3 × 5 min) and incubated with secondary antibodies for one hour at room temperature. Secondary antibodies used were: Alexa Fluor 488-Donkey Anti-Mouse IgG (1:800; Jackson ImmunoResearch Labs), Alexa Fluor 594-Donkey Anti-Goat IgG (1:800; Jackson ImmunoResearch Labs), Alexa Fluor 594-Donkey Anti-Rabbit IgG (1:800; Jackson ImmunoResearch Labs). The tissues were then washed again in PBS (pH 7.4; 3 × 5 min) and cover slipped with Prolong Diamond Antifade Mountant (Thermo Fisher Scientific, #P36970). Slides were imaged on a Leica TCS SP8 confocal microscope. All fluorescent images in the figures are maximum intensity projections. The contrast and brightness of the final images were adjusted by Adobe Photoshop 2023; no other digital image processing was performed.
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3

Automated Capillary Immunoassay for Protein Analysis

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ProteinSimple® capillary-based immunoassay (The Jesss system, ProteinSimple®, San Jose, CA) was performed as previously reported 69 (link). The technology is an automated capillary size separation and nanoimmunoassay system that incorporates and automates the entire protein separation and detection process using homemade antigens. According to the manufacturer's protocol, primary antibodies were diluted targeting the following proteins: PDGFRα (1:50, Cell Signaling Technology), MBP (1:50, Abcam), Olig2 (1:50, R&D Systems). Antibody targets were detected with HRP-conjugated secondary antibodies. Digital images were analyzed using Compass for SW software (V6.1.0, Protein Simple) and quantified data of detected proteins were reported.
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4

Immunocytochemistry of Human iPSCs

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Human iPSCs, NEP, and MNP cultures from controls and C9ORF72 carriers were fixed in 4% paraformaldehyde for 15 min and permeabilized with 0.3% Triton X-100 for 5 min. The cells were blocked with 5% bovine serum albumin for 30 min and incubated using the primary antibodies anti Oct4 1:500 (abclonal; cat#A7920), Sox1 1:200 (R&D systems; cat#AF3369), Olig2 1:500 (R&D systems; cat#AF2418), ChAT 1:200 (Millipore; cat#AB144P) and TUJ1 1:1000 (abclonal; cat# A17913), overnight at 4°C. Cells were then incubated with secondary antibodies Alexa Fluor 488, 568, and 647 at a 1:500 dilution for 2 h at room temperature, and washed with PBS and incubated with Hoechst for 5 min.
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5

Immunohistochemistry and in situ Hybridization

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Immunohistochemistry (IHC) and mRNA in situ hybridization (ISH) were performed as previously described [13 (link), 14 (link)]. The following antibodies were used in immunohistochemistry: Sox2 (sc-17320, RRID: AB_2286684, 1:500; Santa Cruz Biotechnology), Olig2 (AF2418, RRID: AB_2157554, 1:100; R&D Systems; AB9610, AB_10141047,1:500; Millipore), CC1 (OP80, RRID:AB_213434, 1:200;Calbiochem), TCF7l2 (2569S, RRID: AB_2199816,1:200; Cell Signaling Technology; sc-8632, RRID: AB_2199825,1;100; Santa Cruz Biotechnology), PDGFRα (AF1062, AB_2236897,1:200; R&D System), EYFP (06-896, RRID: AB_310288, 1;500; Millipore), NG2 (AB5320, RRID:AB_91789, 1:200; Millipore), Ki67(9129, RRID: AB_10989986,1:200; Cell Signaling Technology), Sox10 (sc-17342, RRID: AB_2195374, 1:100; Santa Cruz Biotechnology), BrdU (sc-70441, RRID: AB_1119696, 1:100; Santa Cruz Biotechnology), APC (sc-896, RRID: AB_2057493,1:100; Santa Cruz Biotechnology). DyLight 488- or DyLight 549-conjugated secondary antibodies were from Jackson ImmunoResearch. Brdu, Edu (Click-iT EdU imaging kits, Invitrogen C10339) immunostaining were performed as previous study [13 (link), 14 (link)].
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6

Multiplex Immunohistochemistry Analysis

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A multiplexed F-IHC was performed57 . The antibody panel consisted of Olig2 (R&D System, Goat polyclonal, AF2418) with CY5.5, GFAP (Cell Signaling Techology, Mouse monoclonal, Clone GA5, #3670) with FITC, and Ki-67 (Dako, Mouse monoclonal, Clone MIB-1, M7240) with CY3. Whole slide Images were acquired from stained slides using a Perkin Elmer Vectra 3 imaging system (PerkinElmer, Inc.), and InForm software (version 3.4.3, PerkinElmer) was used to unmix the signals. Twenty high power fields (20×) were analyzed utilizing Halo Image Analysis platform (Indica Labs) for each tumor. The thresholds for the markers were set, respectively, based on the staining intensity, by cross reviewing 20 images. Cells with the intensity above the setting threshold were defined as positive.
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7

Antibody Panel for Cellular Characterization

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The following antibodies were used for ChIP, western blot, and immunofluorescence: GFAP (Chemicon, 1:1000), GFAP (DAKO, 1:1000), HA (Roche, Covance, SCBT), LacZ (Abcam, 1:1000), LacZ (MP, 1:1000), MBP (Covance, 1:500), NFIA (1:2000), Nkx6.1 (DSHB, 1:5), Olig2 (R&D, 1:2000), Pax6 (Abcam, 1:500). PLP (MP, 1:200), S100 (DAKO, 1:1000), Sox10 (1:10000), Sox10 (SCBT 1:100),
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8

Comprehensive Immunohistochemical Profiling

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Immunohistochemical (IHC) analysis was performed using standard protocols on an automated Ventana Benchmark XT immunostaining system (Roche‐Ventana, Darmstadt, Germany). We used primary antibodies against glial fibrillary acidic protein (GFAP; rabbit polyclonal, Agilent/Dako, Glostrup, Denmark), microtubule‐associated protein 2 (Map2; mouse monoclonal (HM‐2), Sigma‐Aldrich, St. Louis, MO, USA), p53 protein (mouse monoclonal (DO‐7), Agilent/Dako, Glostrup, Denmark), Olig‐2 (goat polyclonal, R&D Systems, Abingdon, UK), epithelial membrane antigen (mouse monoclonal (E‐29), Agilent/Dako, Glostrup, Denmark), p65 RelA (rabbit monoclonal (D14E12), Cell signaling, Danvers, U.S.A.), L1CAM (mouse monoclonal, (UJ127.11), Sigma–Aldrich, St Louis, MO, USA), Claudin‐1 (mouse monoclonal (ab56417), Abcam, Cambridge, UK), Ki67 (mouse monoclonal (Ki‐67P), Dianova, Hamburg, Germany), phospho‐histone‐3 (rabbit polyclonal, Bioclare Medical, Hague, Netherlands) and NF (mouse monoclonal (2F11), Agilent/Dako).
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9

Multiparametric Flow Cytometry for Tumor Stem Cells

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CD133/1-PE or CD133/2-APC (Miltenyi Biotec) and SSEA-1-FITC (BD Biosciences) antibodies were used according to manufacturer’s instructions. For TF staining in primary tumors, single cell suspensions were depleted for CD45-positive cells using a MACS separator (Miltenyi Biotec). Antibodies to SOX2 (R&D Systems), POU3F2 (Epitomics), SALL2 (Bethyl) and OLIG2 (R&D Systems) were directly conjugated to fluorophores using Alexa Fluor Conjugation Kits (Invitrogen) or DyLight conjugation kits (Pierce). The CD45-negative fraction was stained with CD133-PE or CD133-APC prior to fixation and permeabilization according to manufacturer’s protocol using the Transcription Factor Buffer Set (BD Pharmingen). Single color controls for all fluorophores were used for compensation. Flow cytometric analysis was conducted with an LSR II flow cytometer (BD Biosciences) and analysis was performed with FlowJo software (Treestar). See also supplemental methods.
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10

Imaging Xenografted Brain Tissue

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Cells or 10 µm thick slices of xenografted brain tissue were fixed in 4% paraformaldehyde and immunolabeled using the following antibodies: DRP1 (BD Biosystems), phospho-DRP1S616 (Cell Signaling, Danvers, MA), TOM20 (Santa Cruz Biotechnology, Santa Cruz, CA), OLIG2 (R&D Systems), and SOX2 (R&D Systems). Primary antibodies were incubated overnight at 4°C, followed by species appropriate secondary antibodies (Alexa 488 and 568; Invitrogen Molecular Probes, Eugene, OR) with incubation for 1 hour. Nuclei were stained with DAPI, and slides were then mounted using Fluoromount (Calbiochem, San Diego, CA). Images were taken using a Leica Titan confocal or DM4000 Upright microscopy.
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