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1

MicroRNA-381-3p Regulates Neuroinflammation

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The pcDNA empty vector (NC, 5 μg/ml), pcDNA-CCR2 (CCR2, 5 μg/ml), the miRNA control (miR-NC, 50 nM), miR-381-3p mimics (miR-381-3p, 50 nM), the miRNA inhibitor (miR-in, 100 nM), and the miR-381-3p inhibitor (miR-381-3p-in, 100 nM) were supplied by GenePharma Co., Ltd. (Shanghai, China). OGD-elicited BV2 microglia and HT22 hippocampal neurons were seeded into 24-well cell culture plates with a density of 3 × 105 cells/well. Transfection was conducted after they were cultivated in an environment of 37°C and 5% CO2 for 24 hours. The above-mentioned RNAs were transfected into OGD-induced BV2 microglia and HT22 neurons employing Lipofectamine® 3000 (Invitrogen; ThermoFisherScientific, Inc.). qRT-PCR was carried out to determine the efficiency of the transfection [20 (link)]. The cells were incubated under the conditions of 37°C and 5% CO2 for 24 hours in preparation for further analysis.
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2

Transfection and Quantification of CircRNA

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Empty plasmid vector (Vector), circ_0000098 overexpression plasmid (circ_0000098-OE), siRNA negative control (si-NC), siRNAs targeting circ_0000098 (si-circ_0000098#1 and si-circ_0000098#2), miRNA mimics control (miR-NC), miR-1204 mimics, miR-1204 inhibitors (miR-1204-in), negative controls (miR-in), siRNAs targeting ALX4 (si-ALX4), and its negative control (si-NC) were available from GenePharma Co., Ltd. (Shanghai, China). The cells were transfected with Lipofectamine™ 3000 (Invitrogen, Carlsbad, CA, USA). After 48 h, the transfection efficiency was detected by qRT-PCR.
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3

Gastric and Kidney Cell Line Cultivation

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American Type Culture Collection (ATCC, Manassas, VA, USA), together with China Center for Type Culture Collection (CCTCC, Wuhan, China), provided GC cell lines (SGC-7901, MKN28, BGC823 and MGC-803), immortalized gastric epithelial cell line (GES-1) and kidney epithelial cell line HEK293 cells. In DMEM (Hyclone, Logan, UT, USA) supplemented with 10% FBS (Hyclone, Logan, UT, USA), 100 U/mL penicillin and 100 μg/mL streptomycin (Hyclone, Logan, UT, USA), these cells were accordingly cultivated at 37°C in 5% CO2.
LINC00662 and CEP55 overexpression vectors, pcDNA3.1 empty vector (Thermo Fisher Scientific, Wilmington, DE, USA), siRNAs targeting LINC00662 (si-LINC00662), siRNA targeting CEP55 (si-CEP55) and siRNA negative control (si-NC), miR-195-5p mimic (miR-195-5p), miRNA negative control (miR-con), miR-195-5p inhibitor (miR-195-5p in) and inhibitor negative control (miR-in) (GenePharm, Shanghai, China) were transfected into the cells using LipofectamineTM 2000 Reagent (Invitrogen, Waltham, MA, USA).
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4

Investigating MIR497HG Modulation in Neuroinflammation

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The pcDNA empty vector (NC, 5 μg/mL), pcDNA-MIR497HG (MIR497HG, 5 μg/mL), siRNA normal control (si-NC, 50 nM), siRNAs against MIR497HG (si-MIR497HG, 50 nM), miRNA control (miR-NC, 50 nM), miR-29b-3p mimics (miR-29b-3p, 50 nM), and miR-29b-3p inhibitors (miR-in, 100 nM) were supplied by GenePharma Co., Ltd. (Shanghai, China). BV2 and HT-22 cells, inoculated into 24-well plates with a density of 3 × 105 cells/well, were incubated with 5% CO2 at 37°C for 24 hours and then subjected to cell transfection. Lipofectamine® 3000 (Invitrogen; Thermo Fisher Scientific, Inc.) was taken to transfect the above substances into BV2 and HT-22 cells as per the supplier's instructions. qRT-PCR confirmed the transfection efficiency. The cells were incubated with 5% CO2 at 37°C for 24 hours in preparation for further analysis. Following 24 hours' transfection, CGA and OGD were adopted to treat BV2 and HT-22 cells [12 (link)].
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5

Investigating miR-146a-5p Regulation in PAF-Induced HSAECs

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MiR-146a-5p mimics (miR-146a-5p), mimics negative control (miR-NC), miR-146a-5p inhibitors (miR-146a-5p-in), inhibitors negative control (miR-in), empty plasmid and TRAF6 overexpression plasmid were available from GenePharma (Shanghai, China). PAF-induced HSAECs were transfected by lipofectamineTM 3000 (Invitrogen, Carlsbad, CA, USA), and 48 h later, the transfection efficacy was accordingly examined by quantitative real-time polymerase-chain reaction (qRT-PCR).
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6

Modulating PIK3CG in Hepatocellular Carcinoma

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We ordered HCC cell lines (HCCLM3 and Huh-7) and a hepatocellular cell line L-O2 from the American Type Culture Collection (Manassas, VA, USA). Dulbecco’s Modified Eagle’s medium (DMEM) comprising 10% fetal bovine serum (FBS, Gibco, Thermo Scientific, Shanghai, China), 100 U/mL penicillin, and 100 μg/mL streptomycin (Gibco, Thermo Scientific, Shanghai, China) was applied for cell growth. Then, cell culture was performed at 37°C with 5% CO2.
We obtained miR-142-3p mimics, negative controls (miR-NC), miR-142-3p inhibitors and their negative controls (miR-in) from GenePharma (Shanghai, China). Then, the pcDNA3.1-PIK3CG expression vector was built by embedding the overall length of PIK3CG cDNA into the backbone of the pcDNA3.1 vector. Next, the transfection was conducted by utilizing lipofectamine 2000 (Invitrogen, Grand Island, NY, USA) as guided by the manufacturer. In short, the miRNA (50 nM) or plasmid (100 µg) undergoing dilution in 100 µL of OPTI-MEM (Thermo Scientific, Shanghai, China) was subjected to mix with 10 µL of lipofectamine for 15-minute incubation at room temperature (RT). Finally, 48 hours of culture was carried out after adding the mixture to the cells for further analysis [19 (link)].
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