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10 protocols using heparin

1

Isolation of Aortic Endothelial Cells from Mice

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Following the instructions by the established method for aortic endothelial cells isolation in mouse [38 (link)], briefly, the thoracic aortae of mice were surgically isolated and carefully rinsed free of blood with PBS containing 1000 U/mL heparin (Selleck, S1346), and immersed in 20% FBS-DMEM (1 g/L) containing 1000 U/mL heparin. The fat and connecting tissue were quickly removed under a stereoscopic microscope. The inside of the lumen was washed with serum-free DMEM (1 g/L), filled with collagenase II (Sigma-Aldrich, 2 mg/mL; C6685), and incubated at 37℃, for 45 min. Endothelial cells were removed by flushing with 5 mL 20% FBS-DMEM (1 g/L), and collected by centrifuging at 1200 rpm, for 5 min. The cells were then suspended gently with 20% FBS-DMEM (1 g/L), and seeded in a type I collagen-coated dish. After 7 to 10 days, confluent endothelial cells were observable.
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2

Immobilized TRAIL Binding Assay

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6× His-TRAIL was obtained from UBPBio. Mouse Anti-Human TRAIL-UNLB and mouse Anti-Human TRAIL-BIOT (Dallas, TX, USA) were purchased from SouthernBiotech (Birmingham, AL, USA) for ELISA. Dulbecco’s Modified Eagle Medium (DMEM), penicillin–streptomycin, fetal bovine serum (FBS), trypsin, and phosphate-buffered saline (PBS) were purchased from Corning (Corning, NY, USA). Heparin and Bacteroides Heparinase II were received from Selleckchem (Radnor, PA, USA) and New England Biolabs (Beverly, MA, USA), respectively. EZ-Cytox was purchased from DoGenBio (Seoul, Korea). Fmoc-Asp and Fmoc-Arg were obtained from BOC Science (Shirley, NY, US). Monomethoxy polyethylene glycol 750, 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC), N-hydroxy succinimide (NHS), tetrabutylammonium bromide (TBAB), 4-dimethyl amino pyridine (DMAP), dimethyl formamide (DMF) (anhydrous), 1,4-dioxane, piperidine, 3,3′,5,5′-Tetramethylbenzidine (TMB), and streptavidin-HRP conjugate were obtained from Sigma-Aldrich (St. Louis, MO, USA). Ethylene glycol diglycidyl ether (EGDE) was obtained from TCI (Tokyo, Japan). Protease inhibitor and Live and dead staining kit were obtained from ThermoScientific (Waltham, MA, USA).
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3

Cerebral Organoid Differentiation from hESCs

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Organoid-like cerebral structures were differentiated from hESCs as described previously (Lancaster et al., 2013 (link); Lancaster and Knoblich, 2014 (link)). Briefly, hESCs cultured on MEF feeders were digested into single cells. EBs were formed from 2 × 104 cells in a U-bottom ultralow attachment 96-well plate (Corning) in low FGF-2 hESC medium supplemented with 50 μmol/L Y-27632. After four days, FGF-2 and Y-27632 were deprived for another two days. Then, the EBs were transferred to ultralow attachment 24-well plates (Corning) in neural induction medium (DMEM/F12 supplemented with 1% N2, 2 mmol/L GlutaMAX, 0.1 mmol/L NEAA, 1% penicillin/streptomycin and 1 μg/mL heparin (Selleck)) for four days. The EBs were packaged into Matrigel droplets and further cultured in 6-well plates in cerebral organoid differentiation medium (50% DMEM/F12 and 50% Neurobasal, with additional 0.5% N2, 1% B27 without vitamin A (Invitrogen), 2 mmol/L GlutaMAX, 0.05 mmol/L NEAA, 1% penicillin/streptomycin, 2.75 μg/mL insulin (Sigma) and 50 μmol/L β-mercaptoethanol (Sigma)) for four days. Then, the plates were placed on an orbital shaker (shaking at 85 rpm) installed in the incubator, and B27 without vitamin A was replaced by normal B27. After approximately 40 days, the structures were fixed by 4% (w/v) paraformaldehyde for cryosectioning and immunostaining or collected directly for RNA extraction.
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4

Lipid Metabonomics in HUVEC Senescence

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Human umbilical vein endothelial cells (HUVECs) were purchased from ATCC (Manassas, VA, USA) and cultured in F-12K Medium (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% FBS (GIBCO, Grand Island, NY, USA), 0.1 mg/mL heparin (Selleck Chemicals, Houston, TX, USA), and 30 μg/mL Endothelial Cell Growth Supplement (Thermo Fisher) at 37°C in a 5% CO2 atmosphere.
To explore the effects of bleomycin (MedChem Express, NJ, USA) and Astragaloside IV (AS-IV, Solarbio, Beijing, China) on lipid metabonomics in HUVECs, the cells were treated with bleomycin (50 μM) to induce cell senescence; after which, they were coincubated with AS-IV (50 μM) and bleomycin to explore the effect of AS-IV. At the same time, the effect of different doses of bleomycin on LPC levels in HUVECs was detected. The cells were treated with different concentrations of LPC (0.1 μM, 0.25 μM, and 0.4 μM, Merck Millipore, Burlington, MA, USA) to examine the influence of LPC on cell senescence and damage. To further explore how AS-IV functions in the LPC-induced ferroptosis of endothelial cells, the cells were coincubated with LPC (0.4 μM) and AS-IV (50 μM) with or without FIN56 (Selleck, 5 μM).
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5

Vemurafenib Protocol for Cancer Research

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Vemurafenib (vem, PLX-4032, #S1267) was purchased from Selleckchem, Houston, TX, USA.
Heparin (Heparin sodium salt from porcine intestinal mucosa, #4784), Geneticin/G418 (G418 disulfate salt, #A1720) and puromycin (puromycin dihydrochloride, #P8833) were purchased from Sigma-Aldrich, St. Louis, MO, USA.
All drugs were diluted according to the manufacturer’s instructions.
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6

Bufalin-Induced Apoptosis and Stemness Regulation

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Bufalin was purchased from Sigma-Aldrich (St. Louis, MO, USA). The antibody against glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was purchased from PeproTech (Rocky Hill, NJ, USA). The following antibodies were obtained from Cell Signaling Technology (Boston, MA, USA): β-actin rabbit mAb [horseradish peroxidase (HRP) conjugated], caspase 3, Bcl-2, Bcl-xL, caspase 9, and poly(ADP-ribose) polymerase (PARP). The antibodies against Bad and p-Bad were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The antibodies against SOX2, Nanog, Oct4, and hTERT anti-mouse IgG-HRP and anti-rabbit IgG-HRP were purchased from Abcam (San Antonio, TX, USA). RNAiso Plus kits, PrimeScript Reverse Transcriptase kits, and SYBR Premix Ex Taq II kits were purchased from Takara (Tokyo, Japan). The hTERT and β-actin gene primers were synthesized by Sangon Biotech Co. Ltd. (Shanghai, P.R. China). Recombinant human epidermal growth factor (EGF; Invitrogen, Carlsbad, CA, USA), basic fibroblast growth factor (bFGF; EMD Millipore, Billerica, MA, USA), growth factor B-27 (Gibco, Grand Island, NY, USA), growth factor N2 (Gibco), and heparin (Selleck, Houston, TX, USA) were used for spheroid culture.
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7

Isolation and Characterization of Endothelial Progenitor Cells from Peripheral Blood

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A total of 20 consecutive patients with CSF were recruited with the approval of the Ethics Committee of The Fifth Affiliated Hospital of Xinjiang Medical University (XYDWFYLS-2019-08). At the same time, 20 contemporary patients with angiographically normal coronary flow were recruited as controls. The exclusion criteria were adopted from those in a previous study [21 (link)]. Written informed consents were obtained from all patients enrolled.
We collected fasting 10 ml peripheral blood samples from all the study participants in the morning. The peripheral blood mononuclear cells were isolated by Ficoll gradient centrifugation and then inoculated on to a culture plate coated with human fibronectin (BD, U.S.A.). The M199 medium supplemented with 20% foetal bovine serum (Thermo Fisher Scientific, Waltham, MA, U.S.A.), 30 μg/ml endothelial cell growth supplements (Sigma–Aldrich, St. Louis, MO, U.S.A.), 90 μg/ml heparin (Selleck Chemicals, Houston, TX, U.S.A.), and 1% antibiotics solution was changed every 3 days. The adherent cells were screened for markers of peripheral blood EPCs, 7 days later. We identified Dil-AcLDL and FITC-UEA-I (FITC-lectin) (Sigma–Aldrich) double-stained positive cells as differentiated EPCs by IF staining. The purity of isolated EPCs was determined by flow cytometry using anti-CD34 and anti-VEGFR antibodies.
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8

Culturing Stem Cells in Suspension

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Experimental cells (2,000 cells/well) were seeded into low adhesion 6-well plates. Herein, 2 mL of stem cell medium [DMEM/F12 (Gibco) supplemented with 1XB27 (Invitrogen), 20-ng/mL FGF (Gibco), 20-ng/mL EGFI (Gibco), and 4-µg/mL heparin (Selleck, Houston, TX, USA)] was added to each well, and the cells were cultured for 10 days at 37°C in an incubator containing 5% CO2. The state of cell pelleting was observed, and the number of pelleted cells was calculated.
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9

Trophoblast Stem Cell Differentiation

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Mouse fibroblasts obtained from E13.5 fetal and mouse embryonic fibroblast-conditioned media (MEF-CM) were collected after mitomycin treatment. Trophoblast
stem cell medium (TS medium) was comprised of RPMI-1640 (Gibco, New York, USA) supplemented with 20% FBS (Gibco), glutamine, sodium pyruvate, and 50 µM
beta-mercaptoethanol. For normal culture and cell passage, mTSCs were cultured in mTSC complete medium containing 70% MEFs-CM, 30% TS medium, 25 ng/ml FGF4
(PeproTech, New Jersey, USA), and 1 μg/ml heparin (Sigma, St. Louis, USA). mTSCs were digested and passaged using 0.05% trypsin and 0.02% EDTA. For the
induction of STB formation, mTSCs were seeded onto 35 mm dishes and cultured in TS medium without FGF4, heparin, and MEF-CM for two days, followed by
pre-treatment with 3 μM CHIR99021 (Selleck, Houston, USA) for 2 days. Cells were treated with either 10 ng/ml HGF (Peprotech, New Jersey, USA) or 50 ng/ml sMet
(SAB, Maryland, USA) for two days. To induce TGC formation, mTSCs were cultured in the TS medium with HGF/sMet-treatment for 48 h, and the experiments were
withdrawn FGF4, heparin, and MEF-CM.
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10

Endocytosis Inhibitors for Cellular Uptake Studies

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Bortezomib and endocytosis inhibitors, including heparin, chlorpromazine, amiloride, dynasore, wortmannin, omeprazole, and genistein were purchased from Selleck Chemicals (Houston, TX, USA). 5-(N-Ethyl-Nisopropyl) amiloride (EIPA) was obtained from Cayman Chemical (Ann Arbor, MI, USA). Antibodies against flotillin-1 (Flot1, D2V7J, 18634T, 1:1000), glyceraldehyde-3-phosphate dehydrogenase (GAPDH, D16H11, 5174S, 1:1000), calreticulin (D3E6, 12238T, 1:1000), caveolin-1 (CAV-1, D46G3, 3267T, 1:1000), and clathrin heavy chain (CLTC, D3C6, 4796S, 1:1000) were purchased from (Cell Signaling Technology, Danvers, MA, USA). Antibodies against dynamin-2 (DNM2, EPR9053, ab151555, 1:1000) and CD9 (EPR2949, ab92726, 1:2000) were bought from Abcam (Cambridge, United Kingdom). Anti-human CD63 antibody (Ts63, 10628D, 1:250) was obtained from Thermo Fisher Scientific (Waltham, MA, USA). IRDye 680RD or 800CW goat anti-mouse/rabbit IgG secondary antibodies (1:10000) were purchased from LI-COR Biosciences (Lincoln, NE, USA).
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