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34 protocols using golgistop

1

Multicolor Flow Cytometry Protocol

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Surface marker and intracellular transcription factor staining were conducted and analyzed using our previously reported methods [29 (link)]. Briefly, for surface marker and intracellular transcription factors, cells were collected and stained with FITC-, PE-, PerCP-Cy5.5-, APC-, BV421-, or BUV395-conjugated monoclonal antibodies (mAbs) for membrane molecules or intracellular staining after being blocked with anti-mouse CD16/CD32 (Fc Receptor Block, eBioscience, San Diego, CA, USA). For intracellular staining of cytokines, cells were cultured in the presence of GolgiStop (10 μg/ml, eBioscience, San Diego, CA, USA) for 6 h and then collected for the following staining. The immunofluorescent Abs used in this study were all from BD Biosciences (San Jose, CA, USA). Flow cytometric analysis was performed on a 2-laser/4-color FACS Calibur analytical cytometer or a 4-laser/13-color BD LSR II analytical cytometer (BD Biosciences, San Jose, CA, USA), and the data were analyzed with FlowJo software (Tree Star, Ashland, OR, USA).
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2

Multiparameter Flow Cytometry Analysis

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For FACS analyses, the cells were washed in FACS buffer (2% FBS in PBS) and then incubated with FACS antibodies. Staining for mouse CD4 and CD25 (all from BioLegend) was performed for 20 min using a mixture of antibodies. Dead cells were excluded by Fixable Viability Dye eFluor 780 (eBioscience, San Diego, CA). Intracellular staining for Foxp3, IFN-γ, IL-17, and IL-4 (all from BioLegend) was performed after fixation and permeabilization using a Foxp3/Transcription Factor Staining Buffer Set (eBioscience) according to the manufacturer’s instructions. Intracellular staining of IFN-γ, IL-17, and IL-4 (BioLegend) was performed after 4 h of stimulation by phorbol myristate acetate (PMA) (50 ng/mL), ionomycin (0.5 μg/ml), and GolgiStop (eBioscience) were added during the stimulation.
For phosphoextracellular signal-regulated kinase (ERK)1/2 (BioLegend) staining, Phosflow Lyse/Perm buffer and Perm Buffer III (Becton, Dickinson and Company [BD], Franklin Lakes, NJ) were used according to the manufacturer’s instructions. The samples were analyzed with a FACSVerse flow cytometer (BD), and the data were analyzed using FlowJo software (Tree Star, Ashland, OR). The relative mean fluorescence intensity (MFI) ratio was calculated on the basis of the ratio of the MFI for a marker to the MFI of its isotype control.
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3

Cytokine Profiling of Vaccinated Mice

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Spleen homogenates obtained from vaccinated mice were filtrated through a 40 µm cell strainer (BD Biosciences) in RPMI-1640 medium (GIBCO, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (Biowest, Nuaille, France). All erythrocytes were lysed in RBS lysis buffer (Sigma-Aldrich, Merck KGaA) for 5 min and washed with RPMI-1640 medium. Cell suspensions, diluted to 2 × 106 cells/mL, were seeded onto 48-well cell culture plates (SPL) and stimulated with 20 µg/mL of GBS NSP 14-358 lysate in the presence of 0.5 µg/mL GolgiStop (eBioscience, San Diego, CA, USA) and 0.5 µg/mL GlogiPlug (eBioscience) for 12 h at 37 °C. The cells were washed with cold PBS and stained for T cell-surface markers using a LIVE/DEAD staining kit (Aqua vitality dye, InvivoGen, San Diego, CA, USA), anti-CD4-BV421 (1; 200), and anti-CD8a (1; 200) antibodies (BD Bioscience) and then washed in cold PBS. The cell suspensions were subsequently permeabilized using a Cytofix/Cytoperm kit (BD Bioscience) for 30 min at 4 °C. Finally, the cells were stained intracellularly with anti-IFN-γ (PE, BD Biosciences), anti-IL-5 (APC, BD Biosciences), and anti-IL17A (PE-Cy7, BD Biosciences) antibodies. All stained cells were analyzed using a BD FACSverse flow cytometer (BD Biosciences).
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4

Cytokine Profiling of FMDV-specific T Cells

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Then, 2 weeks after the last immunization, the spleen homogenates of immunized mice were filtrated through a cell strainer (40 µm; BD Biosciences) in RPMI 1640 medium (GIBCO) containing 10% fetal bovine serum (GIBCO) and then red blood cells (RBCs) were lysed with RBC lysis buffer (Sigma-Aldrich) for 3 min at room temperature. Single-cell suspension (2 × 106 cells) was incubated with 10 μg/mL VLPFMDV, 2 μg/mL anti-CD28 monoclonal antibody (clone 37.51; eBioscience, San Diego, CA, USA), 0.5 μg/mL GolgiStop (eBioscience), and 0.5 μg/mL GolgiPlug (BD Biosciences) for 12 h at 37 °C. Next, the cells were washed with cold PBS and stained with live/dead staining kit (InvivoGen, San Diego, CA, USA), anti-CD4-BV450 (clone RM4-5; BD Biosciences), anti-CD8α-FITC antibodies (clone 53-6.7; BD Biosciences), anti-CD3e-APC-Cy7 (clone UCHT1; eBioscience) at 4 °C for 30 min. The cells were fixed using Cytofix/Cytoperm Plus Kit (BD Biosciences), washed, and then stained intracellularly with anti-mouse IFN-γ-PE (anti-mIFN-γ-PE; clone XMG1.2; BD Bioscience), anti-mIL-5-APC (clone TRFK5; BD Bioscience), and anti-mIL-17A-PE-Cy7 (clone eBio17B7; eBioscience) at 4 °C for 30 min. The stained cells were analyzed with MACSQuant VYB flow cytometer (Milteny Biotech, San Diego, CA, USA) and the results were analyzed with FlowJo software (TreeStar, Ashland, OR, USA).
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5

Isolation and Characterization of Immune Cells from Intestinal Biopsies

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For different experiments, LPMCs were isolated from intestinal biopsies of mice treated with DSS or from the colon of UC patients and cultured as described above. Prior to intracellular staining, cells were treated with a stimulation cocktail containing phorbol 12-myristate-13-acetate [PMA], Golgi-Stop and Ionomycin [eBioscience] for 4 h at 37°C. Cells were fixed and permeabilized using a transcription factor buffer set [BD Biosciences] according to the manufacturer’s instructions. Cells were stained for CD4 [BD Pharmingen], Tbet [Biolegend], IFNγ [BD Pharmingen], GATA3 [BD Pharmingen], IL4 [Biolegend], IL17A [Biolegend], RorγT [BD Pharmingen] and respective isotype controls. For other experiments cells were stained with CD4 [Biolegend], CD8 [Biolegend], CD14 [BD Pharmingen], CD15 [Biolegend], CD19 [BD Pharmingen], CD11c [BD Pharmingen], NK1.1 [Biolegend], CD68 [BD Pharmingen], CD80 [Biolegend], CD163 [Biolegend], CD206 [BD Pharmingen], CD25 [BD Pharmingen], FoxP3 [BD Pharmingen], CD49b [Biolegend], LAG3 [Biolegend] and IL10 [Biolegend]. Flow cytometry analysis was performed with FACS Calibur [BD Biosciences]. Cells were analysed using the FlowJo single cell analysis software [v.10.1r5, TreeStar].
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6

Multiparameter Immune Cell Analysis

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To create single-cell suspensions, harvested spleens and lungs were incubated in RPMI 1640 digestion media (10% fetal bovine serum, 0.1% collagenase type II (Worthington), 1 mM MgCl2, and 1 mM CaCl2) at 37°C for 30 min. The single-cell suspensions were then filtered through a 40-μm cell nylon mesh cell strainer, treated with RBC lysis buffer (Sigma) for 5 min, and washed twice with RPMI 1640 medium supplemented with 2% FBS. Single-cell suspensions from the spleens and the lungs of immunized mice were stimulated with Rv3628 (5 μg/ml) for 12 h at 37°C in the presence of GolgiStop (eBioscience). The cells were first blocked with Fc Block (anti-CD16/32; eBioscience) for 15 min at 4°C and then stained with fluorochrome-conjugated antibodies against CD4, CD8, CD62L, CD44, CD127 (eBioscience) and CD3 (BD bioscience) for 30 min at 4°C. Cells stained with appropriate isotype-matched immunoglobulins were used as negative controls. The cells were fixed and permeabilized using a Cytofix/Cytoperm kit (BD Biosciences) according to the manufacturer's instructions. Intracellular TNF-α, IL-2, T-bet, GATA-3, RORγt (eBioscience) and IFN-γ (BD bioscience) levels were detected with fluorescein-conjugated antibodies in a permeation buffer. The cells were analyzed with a FACSverse flow cytometer using FlowJo software.
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7

Th17 Cell Intracellular Cytokine Staining

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Mononuclear cells were stimulated with PMA and ionomycin for six hours in the presence of ‘Golgi stop’ (eBioscience, San Diego, CA) as described previously [33 (link)]. Briefly, cells were stained with surface antibodies CD8 Amcyan (BD Biosciences. Oxford, UK), CD3 APC-Cy7 (Cambridge Biosciences, Cambridge, UK), CCR4 PE-Cy7 (BD Biosciences, Oxford, UK) and CXCR3 PE (BD Biosciences. Oxford, UK) for 20 mins at 4°C. Samples were washed, re-suspended in RPMI with 10% human serum (TCS Biosciences, Buckingham, UK) and then stimulated with PMA and ionomycin for six hours in the presence of ‘Golgi stop’. Cells were washed, stained with a dead cell exclusion dye (Invitrogen, Oregon, USA) at 4°C for 20 mins and then washed again before fixation with 2% paraformaldehyde at room temperature for 10–15 mins. After further washing, cells were permeabilised with 0.5% saponin for 5 minutes followed by incubation with the intracellular antibodies IL-17A (BioLegend, London, UK) (2.5 ml), IFN-γ (BioLegend, London, UK) (0.5 ml) and isotype controls for 30 mins at room temperature. Samples were washed and analysed by flow cytometry using on LSR II flow cytometry. To define Th17 cells we measured the secretion of IL-17 using intracellular staining and FACS analysis.
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8

Measuring IFN-γ and CD107a in Splenocytes

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For measurement of the IFN-γ production and CD107a induction, splenocytes from liposome and/or LPS treated mice mentioned before were cultured together with the same number of target cells, or precoated antibodies, or cytokines (recombinant mouse IL-12 (10 ng/ml), recombinant mouse IL-18 (10 ng/ml)) in the presence of GolgiStop (eBiosciences) and Alexa Fluor 647–conjugated anti-CD107a (eBioH4A3) or isotype-matched control antibody. After 6 h, cells were stained with anti-NKp46 antibody and then fixed and permeabilized with Cytofix/Cytoperm Buffer (eBiosciences). Cells were then stained with anti-IFN-γ (XMG1.2) or isotype-matched control antibody.
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9

CAR-T Cell Phenotype Analysis

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All four groups (NC, CAR-T-2598, CAR-T-1847, and CAR-T-1848) of cells (5 × 105/well) were seeded in 24-well plates and incubated with GolgiStop (00-4970-93; eBioscience, Thermo Fisher Scientific, USA) and Protein Transport Inhibitor Cocktail (00-4980-93; eBioscience, Thermo Fisher Scientific, USA) for 5 h for CAR-T cell phenotype analysis. Cells were stained with the following fluorophore-conjugated monoclonal antibodies: MSLN (AARz0215081; R&D Systems, USA), biotin-protein L (RPL-PF141; ACROBiosystems, China), CD8 (344722; BioLegend, San Diego, CA, USA), IFNγ (12-7319-42; eBioscience, Thermo Fisher Scientific, USA), and TNF-α (25-7349-82; eBioscience, Thermo Fisher Scientific, USA). Next, the cells were fixed and permeabilized using eBioscience Fixation/Permeabilization reagent (00-5123-43; Invitrogen, Thermo Fisher Scientific, USA) and buffer (00-8333-56; Invitrogen) for flow cytometry using an Attune Cytometer (Thermo Fisher Scientific, USA). Data analysis was performed using FlowJo software, version 10.0 (BD Biosciences, USA).
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10

IFN-γ Responses to Mycobacterial Antigens

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Three weeks after the final immunization of antigens, single-cell suspensions (1 × 106/mL) from the lung and spleen of adjuvant-, BCG-, and antigen-immunized mice were stimulated with purified proteins (InsB, 2 μg/mL; ESAT-6, 2 μg/mL) for 24 h at 37°C. IFN-γ cytokine levels were analyzed in the culture supernatant via sandwich enzyme-linked immunosorbent assay (ELISA) according to the manufacturer’s protocol. Additionally, single-cell suspensions were stimulated with purified proteins (InsB; 2 μg/mL, ESAT-6; 2 μg/mL) for 12 h at 37°C in the presence of GolgiStop (eBioscience, San Diego, CA, United States), and then the cells were stained with Live/Dead Stain (InvivoGen, San Diego, CA, United States) and with anti-CD4 (PerCp-Cy5.5, eBioscience), anti-CD8 (APC-Cy7, eBioscience), and anti-CD3 (BV421, eBioscience) antibodies for 30 min at 4°C. Next, the stained cells were fixed and permeabilized using a Cytofix/Cytoperm kit (BD Biosciences, San Jose, CA, United States) according to the manufacturer’s protocol and then stained with anti-IFN-γ (PE, eBioscience). The cells were analyzed with a FACSVerse flow cytometer using FlowJo software.
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