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110 protocols using qp2010 ultra

1

Quantitative GC-MS Analysis of Oleanolic Acid

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Prior to derivatization, 100 μL of a methanolic solution of betulinic acid (0.5 mg/mL) was added as an internal standard to 100 μL of the OA-containing sample. The mixture was evaporated to dryness under a N2 stream, and the residue dissolved in 200 μL of the silylating reagent (BSTFA + 1% TMCS in pyridine).
OA was identified and quantified using a coupled GC–mass spectrometry detector (GC-MS) QP2010 Ultra (Shimadzu Europa GmbH, Duisburg, Germany) with an AOC-20i autosampler, an ion source of electron impact and a quadrupole detector. The analysis was carried out in splitless mode, with an injector temperature of 290 °C. Helium was used as a carrier gas at 53.1 kPa and of 1mL/min. The oven temperature program was as follows: initial temperature, 50 °C/1min; 50–200 °C at 40 °C/min; 200–280 °C at 10 °C/min; and finally held for 2 min. Total run time was 14.75 min. The MS conditions were: interface temperature, 280 °C; ion source temperature, 220 °C; electron impact, 70 eV; acquisition mode, scan (m/z 50–600). OA was identified by comparing the retention times and abundance ratios of two fragments ions (203 and 189 m/z).
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2

GC-MS Analysis of Organic Extracts

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Extracts were prepared using 10 mg of each sample and 500 µL of dichloromethane (CH2Cl2), followed by vortex agitation (5 min, room temperature) and ultrasonic bath (15 min, room temperature). The extracts were filtered through cotton wool using a glass syringe. After solvent evaporation, each sample was solubilized with CH2Cl2 in a concentration of 10 mg·mL−1.
GC-MS analyses were performed in a gas chromatograph coupled to a quadrupole mass spectrometer (QP2010 Ultra, Shimadzu Corporation, Kyoto, Japan) using a ZB-5MS column (30 m × 0.25 mm × 0.25 µm) and a temperature program of 60–300 °C at 5 °C·min−1 (60 °C, 3 min; 60–300 °C, 51 min and 300 °C, 71 min). The following conditions were employed: carrier gas, He; column oven temperature, 60 °C; injection temperature, 270 °C; injection mode, split; injection volume, 1.0 µL; flow control mode, linear velocity; pressure, 86.7 kPa; total flow, 11.4 mL min−1; column flow, 1.40 mL min−1; linear velocity, 43.2 cm s−1; purge flow, 3.0 mL·min−1 and split ratio, 5. The mass spectra were acquired in the scan mode between 35 and 500 m/z, with an ion source temperature of 250 °C and EI voltage of 70 eV. Chromatograms and mass spectra were visualized using the GC Solutions (version 4.20 for Windows, Shimadzu Corporation, Kyoto, Japan).
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3

GC Analysis of 2-CP Degradation

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For GC analysis of 25 mg.L−1 2-CP, degraded with 1 g.L−1 GCF1 under visible light, 5 mL aliquots were taken at specified intervals, filtered through 0.22 μm membrane filters and analyzed for the residual 2-CP concentration using GC. To determine the intermediate products, each test sample (0, 30, 90, 150 min) was extracted thrice using 25 mL of Dichloromethane (DCM). Extract thus obtained was dried using anhydrous Na2SO4. Samples were subjected to the GC (QP2010 ultra, Shimadzu) having a DB-5ms capillary column using He as carrier. Initial column temperature for 3 min was maintained at 50 °C followed by a gradual temperature increase at 5 °C min−1 up to 250 °C. Injector and detector temperatures were fixed at 200 and 260 °C, respectively.
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4

Quantifying Glucose, Maltose, and Amino Acids

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Concentrations of glucose and maltose were determined spectrophotometrically by using the Glucose (HK) Assay Kit (GAHK-20, Sigma-Aldrich) and Maltose Assay Kit (MAK019, Sigma-Aldrich), following the manufacturer's instructions. Amino acids were measured using the EZ:faast™ GC-MS free amino acid analysis kit of Phenomenex which was previously used in amino acid uptake profiling of S. lividans [33 (link)]. Derivatization and preparation of samples were following the protocol, and amino acids were measured by GC-MS (QP-2010 Ultra, Shimadzu). The Zebron ZB-AAA capillary column (10 m × 0.25 mm) supplied with the test kit was used. Helium was used as the carrier gas at a flow rate of 1.2 ml min−1. The GC-MS conditions were as follows: the injection temperature, 300°C; the inlet line temperature, 320°C; the ion source temperature, 240°C; initial oven temperature, 110°C; held for 0.5 min then increased to 310°C at 30°C min−1, held for 0.5 min. The scan range was 45–450 (3.5 scans s−1). Under these conditions, a 1 µl sample was injected in a split (1 : 15) mode.
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5

GC-MS Analysis of Fatty Acids and Essential Oils

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Samples were analyzed by GC-MS QP 2010 Ultra (Shimadzu) with capillary column Rtx-5MS (30, 0.25 mm; 0.25 μm coating thickness). The Wiley data library was used for both fatty acid and essential oil to identify the chemical components. Experimental criteria are added to fit the specifications of the Wiley Software library. 15
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6

GC-MS Analysis of Complex Samples

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Gas chromatography-mass spectrometry (GC-MS) analysis was carried out (model; Japan, Kyoto, Shimadzu Corporation, QP2010 Ultra) on a capillary column with a 0.25 mm inner diameter and a 30 m length. The stationary phase used was of 0.25 mm film thickness (U.S.A, Restek Corporation, Rtx-5MS, Bellefonte, PA, USA). Helium (99.999%) was employed as the carrier gas, moving at a constant speed of 36.3 cm/s. A sample volume of 1 l was injected using the AOC-20i + s auto-injector. At 290 °C, the injection port was maintained in split-less mode. The GC oven was preheated to the following temperature: 5 min at 50 °C, followed by 10 min of holding at 300 °C at a rate of 2 °C/min. The m/z range of 30 to 700 was used to construct a total ion chromatogram. By comparing their mass spectra to the National Institute of Standards and Technology’s database (NIST), and with the literature, GC peaks were identified [70 (link),71 (link)]. By comparing each constituent’s peak area to the chromatogram’s overall peak area, the relative percentage quantity of each constituent was calculated [72 (link)].
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7

GC-MS Analysis of Extracts

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The extracts were analyzed by GC-MS using a Shimadzu® chromatograph model QP2010 Ultra equipped with a ZB-5HT column (30 m x 0.25 mm x 0.25 µm). It was carried out under the following conditions: heating at 60°C for 1 min, until reaching 280 °C in 35 min. Injection temperature: 280°C; Interface temperature: 280°C; carrier gas (Helium): 1 mL/min; the electron energy was 70 eV and the temperature of the ion source was 280 °C; scan mode. 1 µL of each extract was injected, in which the constituents were identified by comparison with the mass spectra of the NIST 14 library.
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8

Quantification of Short-Chain Fatty Acids in Intestinal Contents

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Fresh intestinal contents were dried via vacuum freeze drier, and the dry weight was measured. SCFAs were extracted using diethyl ether according to reported protocols [22 (link),23 (link)] and some modifications. The extracts were measured by a gas chromatography-mass spectrometer (GC-MS, QP2010 Ultra, SHIMADZU, Kyoto, Japan) on the Rtx-Wax capillary column with Helium as a carrier gas at 0.89 mL/min. The inlet temperature was 240 °C, and the initial oven temperature was 100 °C. After injection, the oven temperature rose to 140 °C at a rate of 7.50 °C/min, then rose to 200 °C at 60 °C/min and kept for three minutes. The mass spectrometer parameters were set as follows: ion source temperature: 220 °C; Interface temperature: 250 °C; Solvent delay: 2.5 min; m/z scan range: 2 to 100.
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9

GC-MS Analysis of Clove Essential Oil

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Gas chromatography-mass spectrometry (GC-MS) analysis of Eugenia caryophyllata essential oil was carried out using a Shimadzu 2010 Plus gas chromatography coupled to a Shimadzu QP2010 Ultra mass selective detector. The separation was performed by means of a Restek Rxi-5MS capillary column, 60 m length, 0.25 mm i.d. and a 0.25 μm phase thickness. The split mode was used. The oven was programmed as follows: Initial temperature was 60 o C for 2 min, which was increased to 240 o C at 3 o C min -1 , 250 o C was maintained for 4 min. Helium (99.999%) was used as carrier gas with a constant flow-rate of 1 mL min -1 . Detection was carried out in electronic impact mode (EI); ionization voltage was fixed to 70 eV. Scan mode (40-450 m/z) was used for mass acquisition. The volatile compounds were identified by comparison of their retention indices (relative to C7-C30 alkane standards), and matching mass spectral data with those held in FFNSC1.2 and W9N11 library of mass spectra and literature comparison [8] . This part of the study has been performed in the department of chemistry, Faculty of Sciences, Karadeniz Technical University, Trabzon Turkey.
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10

SPME-GC-FID/MS Analysis of Soo Plant Extracts

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The blended fresh plant (2 g),
n-hexane (0.0241 g), methanol (0.3802), and water extracts (0.1450) of
Soowere placed into a sealed SPME vial (10 mL) with a silicone-rubber septum cap, then submitted to a solid-phase microextraction device (Supelco Inc., Bellefonte, PA, USA). A DVB/Carboxen/PDMS coating fiber was used to obtain volatile components. The SPME fibers were conditioned for 5 min at 250 °C in the GC injector. Extraction was achieved with magnetic stirring at 80 °C using an incubation time of 5 min and an extraction time of 10 min. Fibers with extracts of volatile compounds were subsequently injected into the GC injector. GC–FID/MS analysis was performed using a Shimadzu QP2010 Ultra mass selective detector attached to the 2010 Plus chromatograph. The carrier gas used was helium, at a flow rate of 1 mL/min. The injection was performed in split mode (1:30) at 230 °C. Samples were analyzed and the results recorded. The temperature, incubation, and extraction times were set according to the reported experiment [22].
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