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6 protocols using t7471

1

Immunofluorescence Imaging of PAR1 and PAR4

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Primary BEC were cultured on glass chamber slides (80827, ibidi GmbH, Germany). Cells were starved in media without serum and exposed to stimulants for 30 min. Then, cells were fixed in 4% paraformaldehyde in PBS pH 7.4 for 10 min at room temperature and washed 3× with ice-cold PBS for 5 min. Cells were permeabilized with 0.1% Triton X-100 in PBS for 10 min and stained with Texas Red-X Phalloidin for 20 min at room temperature (T7471, ThermoFischer Scientific, Waltham, MA) or alternatively incubated overnight at 4 °C with primary antibody against PAR1 (sc-13503, Santa Cruz Biotechnology Inc., Dallas, TX) and PAR4 (sc-1666, Santa Cruz Biotechnology Inc., Dallas, TX). The samples were subsequently washed and incubated with secondary antibody (A21203, Life Technologies, Eugene OR) for 1 h at room temperature, and 5 min with DAPI (Sigma Aldrich, St. Louis, MO). Cells were imaged at the Stanford University Cell Sciences Imaging Facility on a Zeiss 880 confocal microscope using a ×40 objective.
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2

Evaluating Progerin and LC3B in CCl4-Induced Liver Fibrosis

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Hepatic paraffin sections (3 μm) of CCl4-induced liver fibrosis rat models were prepared for the IF staining for progerin, vWF, and LC3B. The primary antibodies included anti-progerin (1:50), anti-vWF (1:200), and anti-LC3B (1:200). Subsequently, the sections were exposed to the secondary antibodies and DAPI. The sections were visualized with the fluorescence microscope.
The treated LSECs in confocal dishes were fixed with 4% paraformaldehyde and then permeabilized with 0.1% Triton X-100 and blocked with 3% BSA. Next, LSECs were incubated with primary antibodies, including anti-acetyl Lysine (1:200), anti-progerin (1:50), and anti-LC3B (1:200), followed by the secondary antibodies and DAPI. Lastly, LSECs were stained with a phallotoxin (Thermo, #A22287 and #T7471) to detect F-actin. The positive cells were observed by the confocal microscopy and quantified by Image J V1.8.0 software. The experiment was repeated three times.
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3

Immunofluorescence Labeling of Neural Markers

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Primaries: chicken anti-GFP (1:1000, Abcam ab13970, RRID:AB_300798); rabbit anti-pS19-MRLC (1:50, CST 3671); mouse anti-Delta extracellular domain (1:100, DSHB c594.9b, RRID:AB_528194); mouse anti-Notch extracellular domain (1:200, DSHB c458.2H, RRID:AB_528408); guinea pig anti-Delta ECD (1:2000, M. Muskavitch). Secondaries: Rhodamine Red-X anti-guinea pig (1:2000, Jackson ImmunoResearch Labs #106-295-003, RRID:AB_2337428) and Cy5 anti-mouse (1:2000, Jackson ImmunoResearch Labs #115-175-146, RRID:AB_2338713); AlexaFluor 488 anti-chicken (1:1000, ThermoFisher Scientific A-11039, RRID:AB_2534096) and AlexaFluor 568 anti-rabbit (1:1000, ThermoFisher Scientific A-11011, RRID:AB_143157); Texas Red-X Phalloidin (1:500, ThermoFisher Scientific T-7471) were used to visualize F-actin. Nota were mounted in 50% glycerol or Vectashield (with DAPI, Vector Laboratories) for labeling nuclei.
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4

Multicolor Fluorescence Staining Protocol

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Fixed testes were briefly permeabilized with 0.1% Triton-X in PBS for 5 min prior to applying phalloidin. For BODIPY (4,4-Difluoro-1,3,5,7,8-Pentamethyl-4-Bora-3a,4a-Diaza-s-Indacene) staining, samples were suspended in PBS containing 10 μg/ml DAPI (2879083-5 mg, PeproTech), 1:500 BODIPY 495/503 (Thermo Fisher Scientific D3922), and 1:1000 phalloidin iFluor647 (ab176759, Abcam) or 1:40 phalloidin TexasRed (T7471, Thermo Fisher Scientific). For staining with LipidTox Red, samples were suspended in PBS containing 10 μg/ml DAPI (2879083-5 mg, PeproTech), 1:200 LipidTox Red (H34476, Thermo Fisher Scientific), and 1:1000 phalloidin iFluor647 (ab176759, Abcam). For staining free sterols, samples were prepared as for BODIPY staining with 50 μg/ml filipin in place of BODIPY for 30 min. Samples were incubated on a rotating platform for 40 min at room temperature. After incubation, samples were washed twice with PBS, then resuspended in SlowFade Diamond mounting media (Thermo Fisher Scientific S36972) prior to mounting.
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5

Immunofluorescence Assay for NFκB in HUVEC

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HUVEC cells (1 × 104 cells) were cultured on poly-lysine treated cover slips in EGM2 bullet kit (Lonza) for 16 hours and transfected with the miRNA. After 24 hours, cells were treated with LPS for 6 hours. The cells were then fixed in 4% paraformaldehyde for 5 min at 4 °C, permeabilized with 20% v/v Methanol for 5 min at 4 °C, and blocked with 3% normal goat serum (NGS) in 1X PBS containing 0.1% Triton-X-100 for 30 min. The cells were incubated overnight at 4 °C with rabbit anti-NFκB (ab131539, Abcam) in PBS containing 3% NGS and 0.2% Triton-X-100, washed thrice with PBS and blocked again with 10% NGS and washed thrice before staining with Alexafluor 488-conjugated anti-rabbit IgG antibody (A21206, Molecular probes), Texas Red®-X Phalloidin (T7471, Molecular probes) and DAPI for 30 min. The cells were washed twice with PBS and images were acquired using the Olympus FV1000 confocal microscope.
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6

Immunocytochemistry and Western Blot Analysis

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The following antibodies commercially available were used: a rabbit polyclonal antibody directed against recombinant full length GFP (1/1000; ab290, Abcam); a mouse monoclonal [1D4] directed against cow rhodopsin (1/1000; ab5417, Abcam); and a rabbit polyclonal directed against microtubule-associated protein 2 (1/500; sc-20172, Santa Cruz Biotechnology). The secondary antibody used for immunocytochemistry was an Alexa Fluor-conjugated antibody (Alexa 488, Alexa 594, and Alexa 633; 1/1000; Invitrogen). For western blot analysis, a horseradish peroxidase-conjugated secondary antibody (1/10000; Jackson ImmunoResearch Laboratories) was used. Texas Red-X Phalloidin was used to assess filamentous actin (1/1000; T7471, Molecular Probes).
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