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28 protocols using anti na k atpase

1

Antibodies for Western Blotting and Immunostaining

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The following antibodies were used for western blotting and immunostaining: anti-NM1 (M3567, Sigma Aldrich); anti-Myo1c (mouse monoclonal29 (link)); anti-GAPDH (6G5, Acris); anti-V5 (V8137, Sigma Aldrich); anti-lamin A - 133A2, a kind gift from Y. Raymond50 (link); anti-actin (A2066, Sigma Aldrich); anti-Flag (M2, Stratagene), anti-Na/K ATPase (Abcam), anti-pan-cadherin (CH-10, Abcam).
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2

Spatial Localization of NIPA1 Mutants in HeLa Cells

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The NIPA1 (NM_144599.4) tagged with FLAG in C-ter and cloned in pcDNA3.1 vector was acquired from GenEZ™ ORF cDNA Clones (GenScript, Piscataway, NJ, USA). The NIPA1 p.P91R and p.G106R missense mutations were introduced using a Site-Directed Mutagenesis kit (Agilent, Santa Clara, CA, USA) using specific primers for each mutation (available upon request). HeLa cells were grown in complete DMEM and transiently transfected with 2 µg of NIPA1 wild-type (WT), p.P91R, or p.G106R with FuGENE HD Transfection Reagent (Promega, Madison, WI, USA). After 24 h, the cells were fixed, permeabilised and blocked as previously described [13 (link)]. The samples were incubated with the primary antibodies anti-FLAG (Sigma-Aldrich, Saint Louis, MO, USA) and anti-Na+/K+-ATPase, anti-mannose-6-phosphate receptor (M6PR), anti-glucose-regulated protein 94 KDa (GRP94), or anti-early endosome antigen 1 (EEA1; Abcam, Cambridge, UK). The following day, they were exposed to the appropriate secondary antibodies conjugated with fluorophores (Invitrogen, Carlsbad, CA, USA) and examined using the SP2-Leica confocal microscope (Leica, Wetzlar, Germany).
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3

Protein Expression and Signaling Assay

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Cell lysates were prepared in RIPA buffer containing Halt Protease Inhibitor Cocktail and Halt Phosphatase Inhibitor Cocktail (Pierce, Rockford, IL, USA), and were centrifuged at 3500 r.p.m. for 10 min at 4 °C. Protein concentration was measured using Bio-Rad Protein Assay (Bio-Rad Laboratories, Hercules, CA, USA). Proteins (10–15 μg) from each sample were subjected to sodium dodecyl sulphate (SDS)/polyacrylamide gel electrophoresis (PAGE) and transferred onto nitrocellulose membranes. Target proteins were detected using specific antibodies against phospho-STAT3 (Y705) (cat# 9145S), phospho-JAK2 (Y1007/Y1008) (cat# 3771), STAT3 (cat# 12640), JAK2 (cat# 3230 S), and β-actin (cat#3700) (purchased from Cell Signaling Technology, Beverly, MA). Antibodies against phospho-GP130 (Ser782) (cat#sc-377572) and GP130 (cat# sc-376280) were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). For nuclear and cytoplasmic protein fractions, we used NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce Biotechnology Inc.) following the manufacturer’s instructions. The cytoplasmic and nuclear protein fractions were normalized to Anti-NaKATPase (cat# ab76020) (Abcam, Cambridge, MA) and lamin B (cat# sc-374015) (Santa Cruz, CA), respectively. All antibodies were used at 1:1000 dillution.
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4

Immunofluorescence and Western Blotting Protocols

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Primary antibodies were as follows: rabbit polyclonal anti-β4 (32 (link)), mouse monoclonal anti-V5 (Life Technologies, R960-25), and mouse monoclonal anti-Na+/K+ ATPase (Abcam, ab7671). Secondary antibodies were as follows: chicken anti-rabbit IgG (H+L) Alexa Fluor 647 (Life Technologies, A21443), which was used for immunofluorescence, and HRP-conjugated anti-mouse and anti-rabbit IgG (GE Healthcare, NA931 and NA934, respectively), which were used for Western blotting.
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5

Western Blot Characterization of Protein Samples

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Protein samples were run in 8% acrylamide (BioRad) gels or 4–12% precast gradient gels (Invitrogen). Electrical transfer to PVDF membranes (BioRad) was performed in a standard 25 mM Tris, 192 mM glycine, pH~8.3 buffer supplemented with 0.002% SDS for 90 min at 90 V, at 4°C. Membranes were handled in PBS containing 0.2% Tween-20 (PBST). Blocking buffer was 10% newborn calf serum (NCS, Gibco) plus 1% fish gelatin (Sigma) in PBST. Primary antibodies were used at 1:750–1:1000 dilutions, and were purchased from Sigma (anti-LII–III and anti-Nt), Cell Signaling (anti-PARP), and Abcam (anti-Na+/K+-ATPase). Anti-Ct, generated against residues 2155–2171 of the rabbit cardiac Cav1.2 (Hulme et al., 2006 (link)), was a courteous gift from Drs. W.A. Catterall and R. Westenbroek (University of Washington, Seattle). Secondary antibody (goat anti-rabbit, HRP-conjugated, SantaCruz Biotechnologies) was used at 1:2000 dilution. Protein bands were visualized using enhanced chemiluminescence reagents (Pierce) on X-ray film (Kodak). For stripping and reprobing of PVDF membranes, the stripping buffer was 100 mM β-mercaptoethanol, 2% SDS, 62.5 mM Tris-HCl, pH 6.8. Coomassie Blue staining was performed using Biosafe Coomassie (BioRad) according to the manufacturer’s instructions, or using a stain consisting of 0.1% Coomassie Brilliant Blue R-250 in 40% MeOH and 1% acetic acid.
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6

Characterization of Muscle Fiber Proteins

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The RCM-fibers and the TCM-fibers were decomposed by the ultrasound for 5 min with the addition of protease inhibitors. The proteins were collected and subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Proteins were then transferred to PVDF membrane (ThermoFisher Scientific). After blocking with phosphate buffer saline (PBS) containing 5% bovine serum albumin (BSA), the membranes were incubated with anti-mouse or anti-human CD11c (1:500) (Abcam) and anti-Na+/K+ ATPase (1:300) (Abcam) primary antibodies overnight at 4 °C. The membranes were further incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:2000) (Abcam). After washing four times with Tris buffer saline contain 0.5% Tween20 (TBS-T), immunopositive bands were visualized by chemiluminescence detection system (Merck Millipore).
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7

Protein Extraction and Immunoblotting Protocol

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Cytosolic proteins were extracted using RIPA buffer containing Halt protease/phosphatase inhibitor cocktail (Thermo). Membrane fraction of cell lysates were extracted using Mem-PER Plus membrane protein extraction kit (Thermo). For immunoblotting, proteins (15–30 μg for each sample) were separated by 10–12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred onto polyvinylidene fluoride membranes (Biorad) and probed with the following antibodies: anti-pSTAT1Y701, anti-STAT1, anti-pSTAT3Y705, anti-pSTAT3S727, anti-STAT3, anti-p-JAK2, anti-JAK2 (Cell signaling technology), anti-nephrin (Progen), anti-podocin, anti-Na/K ATPase (Abcam) and anti-β-actin (Sigma). Subsequently, membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG or goat anti-mouse IgG (Thermo). Reactive proteins on membranes were visualized using a SuperSignal West Pico Chemiluminescent substrate (Thermo). These membranes were then exposed to an Amersham Imager 600 (GE Healthcare).
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8

Linx Protein Expression and Antibody Analysis

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cDNA encoding mouse Linx (clone 6826287, GenBank accession number BC096531) was purchased from Open Biosystems and subcloned into pcDNA3.1 (Invitrogen) and pRetroQ (Clontech) vectors to fuse Linx with the V5 and SF tag, respectively. GFP-Rho-kinase cDNA was provided by M. Amano and K. Kaibuchi (Nagoya University). The following antibodies were used in this study; anti-Linx (Islr2; R&D Systems), anti-Linx (Islr2; Abnova), anti-Ret51 (IBL, Gumma, Japan), β-actin (Sigma), anti-Tau-1 (Millipore), anti-TrkA (Cell Signaling Technology), anti-phospho-MLC (Ser19; Cell Signaling Technology), anti-MLC (Cell Signaling Technology), anti-Rho-kinase 2 (ROCK2, Abcam), anti-L1 (Millipore), anti-E-cadherin (Cell Signaling Technology), anti-Na+/K+-ATPase (Abcam), and anti-GFP (MBL, Nagoya, Japan).
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9

Antibody Sources for Cell Biology

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Antibodies were obtained from the following sources: anti-ATP7A (Hycult Biotech, Plymouth Meeting, PA, USA), anti-Human Golgin-97 Mouse Monoclonal CDF4 (Molecular Probes, Paisley, UK), anti-GFP and anti-VAP-A from M.A. De Matteis (TIGEM, Naples, Italy), anti-α-tubulin (Sigma-Aldrich, St Louis, MO, USA), anti-TGN46 (AbD Serotec, Oxford, UK); anti-Na+/K+-ATPase (Abcam, Cambridge, UK), anti-MRP2 (Enzo Life Sciences, Lausanne, Switzerland), anti-occludin and secondary Alexa Fluor 568-conjugated antibodies (Invitrogen-Life Technologies, Grand Island, NY, USA). Dual-Luciferase® reporter assay kit was from Promega (Madison, WI, USA).
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10

Membrane Protein Extraction and Western Blot Analysis

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Membrane proteins were extracted from the liver tissues of PIS patients and 293 cells transfected with wild-type and mutant A856V ABCB11, using the Mem-PER Plus Membrane Protein Extraction kit (Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. The Bicinchoninic Protein Quantification kit (CWBiotech, Beijing, China) was used for protein concentration determination. Equal amounts of protein (20 µg) were separated by 6% SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes (EMD Millipore, Billerica, MA, USA), which were blocked and incubated with primary antibodies overnight at 4°C. The primary antibodies used in this study included the following: Anti-BSEP (1:500; cat. no. 155421; Abcam, Cambridge, UK) and anti-Na/K-ATPase (1:1,000; cat. no. 58475; Abcam). The membranes were washed with Tris-buffered saline/Tween-20 and incubated with a horseradish peroxidase (HRP)-conjugated secondary antibody for 2 h at room temperature. The SuperSignal West Femto Substrate Trial kit (Thermo Fisher Scientific, Inc.) was used for signal detection.
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