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Pfu ultra 2 hs dna polymerase

Manufactured by Agilent Technologies
Sourced in United States

Pfu Ultra II HS DNA polymerase is a high-fidelity DNA polymerase designed for accurate DNA amplification in various PCR applications. It possesses 3'→5' exonuclease proofreading activity, resulting in superior fidelity compared to Taq DNA polymerase.

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6 protocols using pfu ultra 2 hs dna polymerase

1

Site-Directed Mutagenesis of Human CaSR

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The wild-type (WT) human CaSR cDNA was cloned between the Kpn I and Xba I sites of pcDNA3.1 (+). All mutants were generated in pcDNA3.1(+)-WT CaSR. The Quikchange II site-directed mutagenesis protocol was used to introduce the point mutations T888A and T888M, as described previously (Lazarus et al., 2011 (link)): briefly, pairs of complementary or overlapping primers (30–40 bases) were designed to encode the required mutation with flanking wild-type sequences of ∼15–20 bases. The template DNA was amplified for 18 cycles with Pfu Ultra II HS DNA polymerase (Agilent Technologies, USA). Following digestion of parent DNA with Dpn I, amplified DNA was transformed into DH5α Escherichia coli cells.
The hCaSR/rmGluR1/rmGluR1 chimeric receptor construct was described previously (Mun et al., 2004 (link)). It encodes a class C GPCR protein that contains the hCaSR VFT domain (residues 1–540) appended to the rat mGluR1alpha Cysteine-rich domain, heptahelical domain, and intracellular C-terminus (residues 524–1199).
The identities of all mutants were confirmed by DNA sequencing (Australian Genome Research Facility, Sydney, NSW, Australia).
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2

Lentiviral Vector Generation for NPRL2 Mutants

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To generate lentiviral vectors expressing the NPRL2 mutants 34*, L105P, T110S, and D214H, QuickChange site-directed mutagenesis was used to mutate our pLVX-FLAG-NPRL2-IRES-zsGreen1 vector. PCR amplification was performed using PfuUltra II HS DNA polymerase (Agilent Technologies, Inc., Santa Clara, CA, USA) and oligonucleotide primers listed in Table S1. All plasmids were validated by sequencing performed on the SANGER Sequencing platform at the CHU de Québec-Université Laval Research Center.
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3

Site-directed mutagenesis of PGC1α-myc-GFP

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Human DYK tagged O-GlcNAc transferase (OGT, OHu54262) and pig Pgc1α-myc (OSe00030D; p.C430S) clones were obtained from GenScript. Pgc1α was subcloned into pEGFP-N1 using BamHI and XhoI restriction enzymes. Site-directed mutagenesis was performed using Pfu Ultra II HS DNA polymerase (Agilent) and DpnI (Fermentas). The following primers were used to create p.430C variant in pig Pgc1α (PGC1aSer430Cys-F 5’-ccacagactcagaccagtgctacctgaccgagacgtcggag-3’ and PGC1aSer430Cys-R 5’-ctccgacgtctcggtcaggtagcactggtctgagtctgtgg-3’). The stop codon was eliminated to overexpress Pgc1α-myc-GFP using PGC1aEGFP-F 5-catctcagaagaggatctgttggatccaccggtcgccacc-3 and PGC1aEGFP-R 5-ggtggcgaccggtggatccaacagatcctcttctgagatg-3.
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4

Cloning and Mutagenesis of EstD11 Enzyme

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EstD11 gene was amplified by PCR using the Pfu Ultra II HS DNA polymerase (Agilent technologies) with oligonucleotides 5′-aaaaaacatatggcaagtgaagcactg −3′ and 5′-aaaaaagaattcttactgccaatgctggc-3′ from the purified fosmid, and cloned into pET22 plasmid without other additional sequences using the restriction enzymes NdeI and EcoRI, which recognition sequences were included in the primers (underlined). EstD11 S144A catalytic mutant was generated in the expression plasmid using QuikChangeTM (Stratagene, CA, USA) with oligonucleotides 5′-gccggccgcatcgccggcaatggc-3′ and 5′-gccattgccggcgatgcggccggc-3′.
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5

Drosophila CTPS Transgenic Lines

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All flies were maintained at 25°C and fed a standard diet made with agar, cornmeal, yeast and molasses, unless otherwise noted. The CTPS transgenic fly lines were created by PCR cloning of the LD25005 cDNA (Drosophila Genomics Resource Center) using the Gateway cloning system into the pDONR-Zeo vector (Thermo Fisher Scientific) and then into the pPW vector from the Drosophila Genomics Resource Center. The H355A mutant was created by site-directed mutagenesis using the Pfu Ultra II HS DNA Polymerase (Agilent) and primers 5′-TGAGCCGAGCAAGTACGCCAAGGAGTGGCAGAAG-3′ and 5′-CTTCTGCCACTCCTTGGCGTACTTGCTCGGCTCA-3′. pPW constructs were used to generate transgenic flies (BestGene) and transgene expression was driven in the germline cells of the ovary with pCOG-Gal4 (Strochlic et al., 2014 (link)) or nosGal4:VP16 (Bloomington stock #4937). The CTPS-GFP protein trap line, CA06746, was provided by A. Spradling.
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6

Cloning and Expression of PCK2 Gene

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PCK2 gene (Invitrogen, USA) was amplified by PCR using Pfu Ultra II HS DNA polymerase (Agilent Technologies, USA) according to manufacturer's instructions. The following primers were used:
PCK2-BamHI-F:
5′-CTAGGATCGGATCCATGGCCGCATTGTACCGCCCTG-3′.
PCK2-NotI-R:
5′-CTAGGATCGCGGCCGCTCACATTTTGTGCACACGTCTCTCC-3′.
PCK2-NheI-F:
5′-CTAGGATCGCTAGCATGGCCGCATTGTACCGCCCTG-3′.
PCK2-myc-NotI-R:
5′-CTAGGATCGCGGCCGCTCACAGGTCTTCTTCAGAGATCAGTTT
CTGTTCCATTTTGTGCACACGTCTCTCC-3′
The last primer included a myc tag sequence to detect the protein in cell culture by western blot. PCR products were digested at 37 °C overnight using either BamHI and NotI or NheI and NotI (New England Biolabs, USA) and cloned into either plasmid pET22bSUMO or pCDNA3.1(-) using T4 DNA ligase (Invitrogen, USA) at 16 °C overnight. Constructs were sequenced and transformed into Arctic Express Escherichia coli strain.
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