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7 protocols using linezolid

1

Antimicrobial Evaluation of Vancomycin, Auranofin, and Linezolid

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Auranofin, linezolid (Chem-Impex International, Wood Dale, IL, USA) and vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO, USA) were purchased from commercial vendors. Skim milk powder was purchased from Oxoid (Basingstoke, Hants, UK). Brain heart infusion (BHI), tryptic soy broth (TSB), Tryptic soy agar (TSA) and enterococcosel agar were purchased from Becton, Dickinson and Company (Cockeysville, MD, USA) and phosphate-buffered saline (PBS) was purchased from Corning (Manassas, VA, USA). Egg yolk emulsion was purchased from HIMEDIA Laboratories (Thane, MH, India). Defibrinated horse blood was obtained from Hemostat Laboratories (Dixon, CA, USA). Clinical isolates of VRE (Table S1) were obtained from the Biodefense and Emerging Infections Research Resources Repository (BEI Resources) and the American Type Culture Collection (ATCC).
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2

Vancomycin-resistant Enterococci Strain Cultivation

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Vancomycin-resistant Enterococci (VRE) strains (Table 1) were obtained from the American type culture collection (ATCC) and Biodefense and Emerging Infections Research Resources Repository (BEI Resources). All experiments were carried out in accordance with relevant guidelines and regulations and were approved by the Institutional Biosafety Committee of Purdue University. All chemicals and reagents were purchased from commercial vendors. Auranofin, linezolid (Chem-impex International, Wood Dale, IL), ampicillin (Peosta, IA), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ), and ramoplanin (Sigma-Aldrich, St. Louis, MO) were purchased commercially. Brain heart infusion (BHI), tryptic soya broth (TSB), tryptic soya agar (TSA) and enterococcosel broth were purchased from BD (Becton, Dickinson and Company, Cockeysville, MD) and Phosphate buffered saline (PBS) was purchased from corning (Corning, NY).
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3

Vancomycin-Resistant Enterococcus Isolation

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Clinical isolates of vancomycin-resistant E. faecium and E. faecalis (Table 1) were obtained from the Biodefense and Emerging Infections Research Resources Repository (BEI Resources) and American Type Culture Collection (ATCC). Ampicillin (IBI Scientific, Peosta, IA, USA), closantel (Ark Pharm, Libertyville, IL, USA), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ, USA), linezolid (Chem-Impex International Inc., Wood Dale, IL, USA), niclosamide (Cayman Chemicals, Ann Arbor, MI, USA), oxyclozanide (Sigma-Aldrich, St. Louis, MO, USA), rafoxanide (TCI America, Portland, OR, USA), ramoplanin (Sigma-Aldrich, St. Louis, MO, USA), and vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO, USA) were purchased from commercial vendors. Brain heart infusion (BHI), Tryptic soy broth (TSB), Tryptic soy agar (TSA) and enterococcosel agar were purchased from Becton, Dickinson and Company (Cockeysville, MD, USA). Phosphate buffered saline (PBS) was purchased from Corning (Manassas, VA, USA).
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4

Enzyme Inhibition Protocol Database

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MTCs 1–15 were obtained as reported earlier22 (link), whereas acetazolamide AAZ (as standard CAI) and buffers were of >99% purity, commercially available from Sigma-Aldrich (Milan, Italy). Antibiotics were purchased commercially: Azithromycin (TCI America, OR, USA), linezolid (Chem-Impex, IL, USA), and vacomycin (GoldBio, MO, USA).
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5

Antibiotic Susceptibility Testing of Bacterial Isolates

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Bacterial isolates (Table 1) were obtained from the American Type Culture Collection (ATCC) and Biodefense and Emerging Infections Research Resources Repository (BEI Resources). Ebselen (Ark pharma, Arlington Heights, IL), linezolid (Chem-impex International, Wood Dale, IL), ampicillin (Peosta, IA), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO), gentamicin sulfate (Fisher Bioreagents, Fairlawn, NJ) and ramoplanin (Sigma-Aldrich, St. Louis, MO) were purchased from commercial vendors. Brain heart infusion (BHI), tryptic soya broth (TSB), tryptic soya agar (TSA) and enterococcosel broth were purchased from BD (Becton, Dickinson and Company, Cockeysville, MD) and phosphate-buffered saline (PBS) was purchased from Corning (Corning, NY).
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6

Evaluation of Antimicrobial Agents against C. difficile

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Auranofin, linezolid (Chem-Impex International, Wood Dale, IL), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO) metronidazole (Beantown Chemical Corporation, Hudson, NH), sodium selenite (MP Biomedicals, Santa Ana, CA), and fidaxomicin (Apexbio, Houston, TX) were procured from commercial vendors. Brain heart infusion (BHI) was purchased from Becton, Dickinson and Company (Cockeysville, MD). Phosphate buffered saline, fetal bovine serum and non-essential amino acids (NEAA) were purchased from Fisher Scientific (Waltham, MA). Yeast extract, L-cysteine, vitamin K, hemin, Dulbecco’s Modified Eagle’s medium (DMEM), and penicillin/streptomycin were obtained from Sigma-Aldrich (St. Louis, MO). C. difficile and enterococcal isolates (Table 1) were obtained from the American Type Culture Collection (ATCC) and Biodefense and Emerging Infections Research Resources Repository (BEI Resources).
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7

Bacterial Strain and Material Acquisition

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Bacterial strains were obtained from various sources as listed in Table S10 and S11. Cation-adjusted Mueller Hinton broth, tryptic soy broth (TSB) and tryptic soy agar (TSA) were purchased from Fisher Scientific (Waltham, MA, USA). Linezolid (Chem-Impex International, Wood Dale, IL, USA), vancomycin hydrochloride (Gold Biotechnology, St. Louis, MO, USA), daptomycin (AK Scientific, Union City, CA, USA), ciprofloxacin (Sigma Aldrich, St. Louis, MO, USA), menaquinone-9 (Cayman Chemical, Ann Arbor, MI, USA), deferoxamine mesylate (Cayman Chemical, Ann Arbor, MI, USA), 2,3-Dihydroxybenzoic acid (Sigma Aldrich, St. Louis, MO, USA), ferrichrome (Sigma Aldrich, St. Louis, MO, USA), hemin (Sigma Aldrich, St. Louis, MO, USA), hemoglobin (Sigma Aldrich, St. Louis, MO, USA), ammonium iron(II) sulfate hexahydrate (Sigma Aldrich, St. Louis, MO, USA), and EDDHA (Arctom Chemical, Westlake Village, CA, USA) were purchased commercially. Tris-minimal succinate (TMS) was prepared as previously described.75 (link) Compounds were previously synthesized in our laboratory and used as DMSO stock solutions.
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