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18 protocols using nec 1

1

Nec-1 Regulates P4, Apoptosis in LSCs

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To reveal the effects of Nec-1 on P4 production and cell death in LSCs, the cells were exposed to Nec-1 (50 μM; Enzo Life Sciences, Inc., NY, USA, #BML-AP339-0100) with or without TNF and IFNG treatments for 12 or 24 h. The Nec-1 dose was selected based on previous reports60 (link) and a preliminary study (data not shown). After 12 h of stimulation, the concentration of P4 in culture media and mRNA expression of BCL-2, BAX, CASP8, CASP3, RIPK1 and RIPK3 were determined by EIA and quantitative RT-PCR, respectively. Furthermore, after 24 h of stimulation, cell viability and RIPKs protein expression were determined by AlamarBlue assay and western blotting, respectively.
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2

Ferroptosis Regulators Protocol

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Lip-1 (Selleckchem, cat. no. S7699), doxycycline (Dox; Sigma, cat. no. D9891), RSL3 (Cayman, cat. no. 19288), BSO (Sigma, cat. no. B2515), iFSP1 (ChemDiv, cat. no. 8009-2626), icFSP1 (ChemDiv, cat. no. L892-0224 or custom synthesis by Intonation Research Laboratories), erastin (Merck, cat. no. 329600), ML210 (Cayman, cat. no. Cay23282-1), FIN56 (Cayman, cat. no. Cay25180-5), FINO2 (Cayman, cat. no. Cay25096-1), deferoxamine mesylate salt (DFO; Sigma, cat. no. 138-14-7), ferrostatin-1 (Fer-1; Sigma, cat. no. SML0583), zVAD-FMK (zVAD; Enzo Life Sciences, cat. no. ALX-260-02), necrostatin-1s (Nec-1s; Enzo Life Sciences, cat. no. BV-2263-5), MCC950 (Sigma, cat. no. 5381200001), olaparib (Selleckchem, cat. no. S1060), staurosporine (STS; Cayman, cat. no. 81590), recombinant human tumour necrosis factor (TNF; R&D Systems, cat. no. NBP2-35076), Smac mimic (BV-6; Selleckchem, cat. no. S7597), nigericin (Thermo Fisher, cat. no. N1495), IMP-1088 (Cayman, cat. no. Cay25366-1) and lipopolysaccharide (LPS; Sigma, cat. no. L2880) were used in this study.
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3

Isolation and Priming of Mouse Neutrophils

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Mouse bone marrow cells from the femur and tibia were isolated in Hanks’ balanced salt solution (HBSS) supplemented with 0.075% bovine serum albumin (BSA) and 15 mM EDTA. Cells were overlaid on 78, 68, and 52% Percoll layers and centrifuged at 400g for 30 min at 4°C. Neutrophils were removed from the 68/78% interface and resuspended in Dulbecco’s modified Eagle’s medium (DMEM)/10% fetal bovine serum (FBS) for survival assays, or DMEM without FBS for NET assays. The purity of neutrophil preparations was 97 ± 1% (mean ± SD, n = 8) as assessed by May-Grünwald-Giemsa staining. Contaminating cells were composed of lymphocytes (2 ± 1%) and nucleated red blood cells (1 ± 1%). For assays, neutrophils were primed for 1 hour in recombinant human G-CSF (100 ng/ml; Amgen) or recombinant mouse IFN-γ (100 ng/ml; PeproTech) and then treated with combinations of recombinant mouse TNFα (10 ng/ml; PeproTech), 2 μM birinapant (Tetralogic Pharmaceuticals), 10 μM z-VAD-fmk (Sigma-Aldrich), 10 μM Nec-1s (Enzo Life Sciences), DNase I (100 U/ml; Worthington Bioscience), or 10 mM NAC (Enzo Life Sciences). Compound B (GT13030–002A) and birinapant were provided by Tetralogic Pharmaceuticals. Compound B functionally inhibits cIAP1, cIAP2, and XIAP. Birinapant inhibits cIAP1 and cIAP2 activity.
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4

Rat Alveolar Epithelial Cell ALI Model

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The rat alveolar epithelial RLE-6TN cell line, which was derived from alveolar type II cells isolated from a 56-day-old male F344 rat by airway perfusion with a pronase solution, was purchased from American Type Culture Collection. Cells were cultured in DMEM/F12 medium (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.). The cell model of ALI was induced using TNF-α (40 µM; Sigma-Aldrich; Merck KGaA). The treatment group was co-treated with TNF-α and Nec-1 (50 µM; Enzo Life Sciences, Inc.) for 6 h at 37°C. The mock group was treated with saline for 6 h at 37°C. The cells were harvested at 6 h after initiation of the experiment for subsequent analyses.
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5

Photochemical Inhibition of Neutrophil Extracellular Trap Formation

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For inhibition experiments, cells were isolated, settled in RPMIcomp. supplemented with 10 mM HEPES and activated as described above. Inhibitors or ROS scavengers were added at least 20 min (in case of MitoTEMPO 1 h) before cell irradiation with 70 J/cm2 of 375 nm or 214 J/cm2 of 470 nm, at 37°C. For an additional control experiment, Trolox and catalase/SOD were added separately after irradiation. The cells were then incubated for an additional 3 h without an additional washing step in the presence of the inhibitors to allow for NET formation and fixed by 2% PFA. Pure medium or 100 nM PMA without irradiation were used as negative and positive controls, respectively. The following inhibitors and ROS scavengers were used in this study: GW-311616A hydrochloride (iNE, Axon Medchem) at 5 μM, 4-aminobenzoic acid hydrazide (4-ABAH, Cayman chemicals) at 100 μM, z-VAD-FMK (Promega) at 20 μM, necrostatin-1 (Nec-1, Enzo) at 50 μM, Y-27632-dihydrochloride (Abcam) at 20 μM, Cl-amidine (Merck Millipore) at 200 μM, MitoTEMPO (Sigma-Aldrich) at 5 μM, diphenyleneiodonium chloride (DPI, Sigma-Aldrich) at 1 μM, Trolox (Sigma-Aldrich) at 50 μM, PEG-catalase at 2,000 U/ml (Sigma-Aldrich), and a mixture of catalase (filtered, Worthington) and superoxide dismutase (SOD, Sigma Aldrich/Merck) at 2,000 and 50 U/ml, respectively.
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6

Kinase Inhibitor Library for Cell Treatments

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The kinase inhibitor library, composed of 149 selective or broad-spectrum kinase inhibitors dissolved in DMSO (10 mM stock concentration), was purchased from Cayman Chemicals (#10505). The following reagents were used for cell treatments at given concentrations: LPS (Escherichiacoli O55:B5, #L2880, Sigma-Aldrich, 100 ng ml−1), recombinant human TNFα (rHuTNF, #50435.50, Biomol, 10 ng/ml), Birinapant/SM (#HY-16591, MedChem Express, 1 µM), pan-caspase inhibitor zVAD-fmk (#4026865.0005, Bachem, 25 μM), MK2 inhibitor PF3644022 (#4279, Tocris, 5 μM), RIPK1 inhibitor Nec-1 (#BML-AP309-0020, Enzo Life Sciences, 50 µM), RIPK1 inhibitor Nec-1s (# 10-4544-5 mg, Tebu-Bio, 50 µM), RIPK3 inhibitor GSK872 (#HY-101872, MedChem Express, 5 µM), IKKβ inhibitor BMS345541 (#Axon 1731, Axon Medchem, 5 µM), TBK1/IKKε inhibitor BX795 (#T1830, Tebu-Bio), 5-Iodotubercidin (#HY-15424, MedChem Express, 2.5–10 µM), ABT-702 dihydrochloride (#HY-103161, MedChem Express, 5 µM), Staurosporine (#81590, Cayman, 5 µM), Etoposide (#E1383, Sigma, 5 µM), Doxorubicin (#15007, Cayman, 5 µM), Gemcitabine (#S1714, Selleckchem, 100 nM).
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7

Nec-1 Attenuates LPS-Induced Acute Lung Injury in Mice

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All animal procedures were approved by the Institutional Animal Care and Use Committee of Wenzhou Medical University. Mice were fasted for 8 h prior to the experiment. Before induction of ALI, the mice were anesthetized by inhalation of sevoflurane and were transtracheally injected with either Nec-1 (5 mg/kg; Enzo Life Sciences, Inc.) or saline as a control. LPS-induced ALI was induced by transtracheal injection of LPS (Sigma-Aldrich; Merck KGaA) at a dose of 10 mg/kg 30 min after Nec-1 or saline treatment. Additionally, the mice of sham-operation were transtracheally injected with saline and treated with saline only. During the experiment, the mice were monitored every 30 min. All mice survived until sacrifice 6 h after initiation of the experiment. The mice were sacrificed by cervical dislocation under 3% sevoflurane inhalation, after which, the lungs were quickly removed. Lung samples were either placed in a buffered solution for histopathological analysis, or snap-frozen for protein isolation or for analyzing apoptosis by flow cytometry. Prior to tissue collection, death was confirmed after 1–2 min of cardiac and respiratory observation.
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8

Comprehensive Anticancer Drug Screening

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5AzadC, 5-FU, oxaliplatin, irinotecan, doxorubicin, and etoposide were obtained from Sigma (St. Louis, MO, USA). zVAD, Nec-1, DPQ, and PD150606 were obtained from Enzo Life Sciences (Farmingdale, NY, USA). LBW242 and BV6 are kind gifts from Novartis (Cambridge, MA, USA) and Genentech (San Francisco, CA, USA), respectively.
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9

Modulating Cell Death Pathways

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z-VAD-fmk, Nec1, and TRAIL were purchased from Enzo Life Sciences. CHX, actinomycin D, and LY294002 were purchased from Sigma. PD98059 was purchased from ChemScene. H89 was purchased from Cayman Chemical. (5Z)-7-Oxozeaenol was purchased from Santa Cruz Biotechnology. Doxycycline was purchased from MP Biomedicals. Anti-human Fas agonistic antibody CH11 was purchased from Millipore. Poly(I:C) HMW was purchased from Invivogen. IFN-β was purchased from BioLegend. Smac mimetics LBW242 and BV6 were kindly provided by Novartis and Genentech, respectively. GSK’481, GSK’728, and GSK’963 were kindly provided by GlaxoSmithKline. Cells were pretreated with 10 μM z-VAD-fmk, 5 μM LBW242, 0.25 μM BV6, 2 μM Nec1, 2 μM GSK’481, 2 μM GSK’728, or 2 μM GSK’963 for 1 hour before TNF stimulation unless otherwise stated.
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10

Statin-induced Cell Viability Modulation

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Cells were seeded into a 96-well plate (6 × 104/well) on F-12K medium and treated with statin (10–20 μM, Merck Millipore, Germany) for 48 h, beginning 24 h after seeding. WST-1 solution (10 μL, Roche, Germany) was added to each well and the cells were incubated for 1 h. The absorbance at 440 nm was measured using a microplate reader (FLUOstar Galaxy, Germany). In some experiments, the cells were pretreated with various inhibitors such as necrostatin-1 (Nec-1, an inhibitor of RIP1, 10 μM, Enzo Life Sciences, USA), necrosulfonamide (NSA, an inhibitor of MLKL, 1.0 μM, Millipore), bafilomycin A1 (Baf-A1, 2 nM, Sigma-Aldrich), 3,4-dihydro-5[4-(1-piperidinyl)butoxyl]-1(2H)-isoquinoline (DPQ, 60 μM, Calbiochem), Z-Val-Ala-Asp-fluoromethylketone (zVAD-fmk, 2 μM, BioVision, USA), and mTOR inhibitors (rapamycin, 20 nM, Adooq BioScience, USA) before statin treatment.
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