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Oxidase reagent

Manufactured by bioMérieux
Sourced in France

The Oxidase reagent is a laboratory product used to perform the oxidase test. The oxidase test is a biochemical assay used to detect the presence of the cytochrome c oxidase enzyme, which is indicative of certain bacterial species. The reagent allows for the rapid identification of oxidase-positive bacteria.

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12 protocols using oxidase reagent

1

Isolation and Characterization of Aeromonas from Freshwater Lakes

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Surface water samples were collected from 5 fresh water multi-purpose recreational lakes in Selangor, i.e., Tasik Aman (lake 1) (N 03.10261 °, E 101.62477 °), Tasik Taman Jaya (lake 2) (N 3.10418 °, E 101.64929 °), Tasik Varsiti Universiti Malaya (lake 3) (N 3.11941 °, E 101.65808 °) and two unnamed lakes in Rawang (lake 4 and lake 5) (N 03.36606 °, E 101.63717 ° and N 03.36752 °, E 101.63043 °). All samples were kept at 4°C and analysed within 30 hours of collection.
The samples were pre-filtered to remove residue and subsequently filtered through a 0.45 μm nitrocellulose membrane (Sartorius, Germany) using a vacuum system. The membranes were then suspended in broth and plated onto m-Aeromonas selective media (Biolife, Italia Srl) supplemented with ampicillin (10 mg/l) [25 (link)]. Yellow colonies on the agar plates due to dextrin fermentation, after 18–24 hours of incubation at 30°C were presumed to be Aeromonas species and tested with oxidase reagent (bioMérieux, France), checked for growth on MacConkey agar and 6.5% (w/v) NaCl-Luria Bertani (LB) broth. Oxidase-positive colonies growing on MacConkey agar but not in 6.5% NaCl-LB broth were further confirmed to genus level by the API 20E system (bioMérieux, France), then grown in LB broth, cryopreserved in 20% (v/v) glycerol at -80°C and maintained in LB agar and broth as working cultures.
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2

Physiological Characterization of Bacteria

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Growth in R2A agar (Becton Dickinson, NJ, USA) was assessed at different temperatures (4, 10, 15, 20, 25, 30, 37, 40, and 45°C), at various pH values (pH 3–11 at intervals of 1.0 pH units), and with different NaCl concentrations (0, 0.5, 1–20% NaCl at intervals of 1.0%) after a 24hr incubation period. Catalase activity tests using 3% H2O2 solution and oxidase tests using oxidase reagent (bioMérieux, Inc.) were performed. To test the ability to ferment sugars and to produce hydrogen sulfide (H2S), bacteria were inoculated into a Triple Sugar Iron (TSI) agar slant. Other biochemical characteristics and enzyme activities were assessed using the Vitek 2 GN ID Card (bioMérieux, Inc.).
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3

Comprehensive Bacterial Characterization Protocol

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Gram staining was performed with a Gram-staining kit (Himedia, India). Test for starch hydrolysis, IMViC (Indole, Methyl Red, Voges Proskauer, Citrate utilization), cellulase, pectinase, and lipase was performed following the standard protocol (Harley and Prescott, 2002 ). Catalase and oxidase activity was performed by using 3% (v/v) H2O2 and using an oxidase reagent (BioMerieux, France), respectively. The test of growth at different temperatures was done between 20°C to 45°C in sterile LB-medium. pH of LB-medium was adjusted with suitable buffers and tolerance to different pH (5.0 to 9.0) was examined. The ability to utilize different carbon sources was tested by the Himedia Carbohydrate utilization kit (KB009). The selected isolate was tested for its susceptibility against different antibiotics following CLSI (Clinical and Laboratory Standards Institute) instruction. The freshly grown culture of OS-1 was spread on an LB-agar plate and a paper disk containing different antibiotics namely ampicillin, kanamycin, erythromycin, tetracycline, ciprofloxacin, gentamicin, and streptomycin were placed, and incubated for 24–48 h. The result was interpreted by measuring the zone of inhibition (ZOI) created by the antibiotics disk. The isolate was tested for various motility behaviors such as swimming, swarming, and twitching following standard protocol (Connelly et al., 2004 (link)).
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4

Characterization of Bacterial Strain Motility

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Motility was examined using a CX21FS1 light microscope (Olympus, Tokyo, Japan). The Gram-staining reaction was performed as described previously (38 ). Growth at different temperatures (4, 15, 20, 25, 30, 35, 37, 45, and 50°C), at different pH values (3.0 to 12.0, at intervals of 1.0 pH unit), and at various salt concentrations (0 to 10% [wt/vol] NaCl) was determined in 15-ml test tubes containing 3 ml tryptic soy broth (TSB; Hopebio, Qingdao, China) after incubation for 2 days in a thermostatically controlled water bath as described previously (39 (link)). Anaerobic growth was performed by incubating cultures on nutrient agar for 7 days in an anaerobic bag (bioMérieux). Biochemical characteristics of the three strains were determined using the API 20E kit and API 50CH kit according to the manufacturer’s instructions (bioMérieux). Catalase activity was examined by bubble formation after dropping 3% (vol/vol) H2O2 on fresh biomass grown for 24 h on nutrient agar. Oxidase activity was determined using oxidase reagent (bioMérieux). All tests were carried out by incubating at 35°C unless indicated otherwise.
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5

Gram-staining and biochemical analysis

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As previously described (29 ), the Gram-stain was performed and the biochemical characteristics of strain PR-310 were determined using the bioMérieux API 20E kits according to the manufacturer’s instructions. Oxidase activity was determined using an oxidase reagent (bioMérieux).
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6

Gram-staining and biochemical analysis

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As previously described (29 ), the Gram-stain was performed and the biochemical characteristics of strain PR-310 were determined using the bioMérieux API 20E kits according to the manufacturer’s instructions. Oxidase activity was determined using an oxidase reagent (bioMérieux).
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7

Gram Stain and Antimicrobial Susceptibility

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As described previously (43 (link), 44 ), the Gram stain was performed and the biochemical characteristics were determined using the bioMérieux API 20E and API 50CH kits according to the manufacturer’s instructions. Oxidase activity was determined using oxidase reagent (bioMérieux). The whole-cell fatty acids of strain D459 were assessed by the Guangdong Institute of Microbiology (Guangzhou, Guangdong, China). Meanwhile, in vitro antimicrobial susceptibility tests were conducted using Vitek II through broth microdilution. Breakpoints were determined using Clinical and Laboratory Standards Institute (CLSI) criteria (45 (link)), with the exception of tigecycline, for which the European Committee on Antimicrobial Susceptibility Testing (http://www.eucast.org/) guidelines were adopted.
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8

Phenotypic Characterization of Phaeovulum Strains

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Strains FR2A1T and MT2-5-38, together with the reference strain Phaeovulum vinaykumarii JA123T (=DSM 18714T), were maintained under identical conditions for phenotypic comparison. Colony morphology was recorded on MA after incubation at 30°C for 2 days. Gram staining was carried out using a Gram staining kit (Hangzhou Microbial Reagent, Co. Ltd.). Catalase activity was tested using a 3% H2O2 solution. Oxidase activity was tested using the oxidase reagent (bioMérieux, France). The growth temperature range was determined under various temperatures (4, 10, 15, 20, 25, 28, 30, 35, 40, and 45°C) for 1 week. Anaerobic culture was tested in 10 mL MB in 50 mL anaerobic flasks according to our previously documented method (Liu et al., 2019 (link)). Physiological and biochemical characterization was carried out at 30°C using API ZYM, API 20NE, and API 20E strips according to the manufacturer’s instructions (bioMérieux, France).
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9

Colorimetric assay of cytochrome c oxidase

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The presence of active c-type cytochrome oxidase was verified by a colorimetric assay using N, N, N′, N′-tetramethyl-p-phenylenediamine (TMPD) as an artificial electron donor that can be oxidized by cytochrome caa3 to a blue colored product that stains colonies. TMPD oxidase staining was performed by adding drops of oxidase reagent (bioMerieux, Craponne, France) to B. cereus colonies grown overnight at 30 °C on LB plates.
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10

Enzyme and Carbohydrate Utilization Assays

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Enzyme activity and carbohydrate utilisation of both isolates was tested using the API ZYM and API 50 CHB kits (bioMérieux, Nürtingen, Germany) according to the instructions of the manufacturer with adjusted salt concentrations. ALD_SL1 and ALD_RP9 cultures were washed twice before testing and resuspended in 11% or 5% saline respectively, for application in the API ZYM kit. The CHB medium of the 50 CHB kit was supplemented with 11% NaCl. Reactions in the 50 CHB kit were recorded up to 72 h of incubation. Oxidase production was tested by applying a drop of Oxidase Reagent (bioMérieux, Nürtingen, Germany) to a Rotilabo-test disk (∅ 6 mm). After adding a colony to the disk, it was monitored for a colour change. Catalase activity was tested in the same manner, but with 3% H2O2 as reagent and monitoring for bubble development. Each test was replicated three times. Both isolates were examined by Gram-staining [23 (link)].
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