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10 protocols using irdye 800cw goat anti rabbit 926 32 211

1

Western Blot Analysis of Histone H3 in Tumor Tissues

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Cell lysates from tumor tissues were run on a 15% Bis‐Tris gel then transferred to a 0.2‐mm nitrocellulose membrane. After blocking in 5% BSA, membranes were incubated overnight at 4 °C with primary antibodies for histone H3 (Abcam) and β‐actin (Cell Signaling Technology, Danvers, MA, USA). Proteins were visualized using IRDye® 800CW goat anti‐rabbit 926–32 211 (1 : 10 000; LI‐COR, Lincoln, NE, USA) secondary antibodies. Images were captured with the Odyssey system (LI‐COR). The protein was semi‐quantified through the image studio Ver 5.2 software (LI‐COR, Lincoln, NE, USA).
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2

Hcp Western Blot Analysis of Bacterial Cultures

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Hcp western blots were performed as previously described34 (link). Briefly, supernatants and whole cell samples were obtained from mid-log bacterial cultures. Samples were resuspended in 1X Laemmli buffer and loaded in a 12% polyacrylamide gel for separation. The mouse anti-Hcp54 (link) and rabbit anti-RNA polymerase (#663104, Biolegend, San Diego, CA) were both used at a concentration of 1:1000. Secondary IR dye antibodies from Licor were used at 1:10,000 (IRDye 800 CW goat anti-rabbit 926-32211 and IRDye 680 RD goat anti-mouse 925-68070). All blots were blocked in TBS blocking buffer (Licor).
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3

Western Blot Analysis of Signaling Pathways

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Whole cell lysates were extracted using RIPA reagent (Beyotime, China) supplemented with protease inhibitors (Roche cOmplete ULTRA tablets), and protein concentrations determined using a Bicinchoninic Acid Protein assay Kit (Thermo Fisher, USA). Total protein aliquots (20 μg) were separated by SDS-PAGE, as described previously. Primary antibodies against p-EGFR (#3777S, CST), EGFR (#2085, CST), p-AKT (#4060, CST), AKT (#4821, CST), IFIT-1 (23247-1-AP, Proteintech), IFIT-3 (15201-1-AP, Proteintech), and β-actin (#4970, CST) were applied in this study. Secondary antibodies used were IRDye 800CW Goat anti-rabbit 926-32211 (Lot No. C90723-19, LI-COR) and IRDye 800CW Goat anti-mouse 926-32210 (Lot No. C90408-08, LI-COR).
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4

Antibody Characterization for LRIG1 Analysis

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The antigen peptides for all LRIG1 antibodies used are indicated in Supplementary Fig. 1B. For immunohistochemistry: Anti-LRIG1 antibody (Atlas Antibodies AB, Bromma, Sweden, catalog no. HPA011846), 4.0 mg/ml. The 1A8 anti-LRIG1 antibody is described in the Supplementary Materials. For western blots: EGFR #2232, 1:1000; Phospho-p44/42 MAPK #4370, 1:1000; Phospho-AKT #4060, 1:1000 (Cell Signaling Technology Inc, Danvers, USA); Anti-Actin #ACTN05/C4, 1:3000 (Abcam, Cambridge, UK). Anti-LRIG1 Vina [49 (link)], 1:1000 (Agrisera AB, Vännäs, Sweden). Secondary antibodies: IRDye® 680RD Donkey anti-Mouse #926-68072, 1:15000; IRDye® 800CW Goat anti-Rabbit #926-32211, 1:15000 (LI-COR, Lincoln, NE, USA).
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5

SARS-CoV-2 Protein Detection by Western Blot

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Cells were lysed using Triton X-100 sample buffer (Sigma-Aldrich), and proteins were separated by SDS-PAGE. Detection occurred by using specific antibodies against GAPDH (1:1000 dilution, #2275-PC-100, Trevigen), SARS-CoV-2 NP (1:1000 dilution, #40143-R019, Sino Biological), ACE2 (1:500 dilution, #ab15348, Abcam), and TMPRSS2 (1:1000 dilution, Recombinant Anti-TMPRSS2 antibody [EPR3861], #ab92323, Abcam) followed by incubation with IRDye-labeled secondary antibodies (LI-COR Biotechnology, IRDye800CW Goat anti-Rabbit, 926-32211, 1:40,000) according to the manufacturer’s instructions. Protein bands were visualized by laser-induced fluorescence using an infrared scanner for protein quantification (Odyssey, Li-Cor Biosciences, Bad Homburg, Germany).
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6

Western Blot Analysis of ORF1p Protein

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Cells were collected and lysed with NP-40 buffer (Beyotime). The protein lysis was boiled for 20 min at 100 C in SDS-PAGE loading buffer. Equal amounts of cell lysate were 10% polyacrylamide-SDS gels. Proteins were transferred onto a PVDF membrane, blocked with 5% skim milk, and probed with anti-ORF1p antibody (diluted 1:1000) and anti-β-actin antibody (diluted 1:5,000) at 4°C overnight. After four wash steps with PBS plus 0.1% Tween 20 (PBST), the membrane was incubated with 1:5,000 dilution of HRP-conjugated goat-anti-mouse, HRP-conjugated goat-anti-rabbit, IRDye® 800CW Goat anti-Rabbit 926–32,211 (1:10,000, LI-COR) and IRDye® 700CW Goat anti-Mouse 926–32,210 (1:10,000, LI-COR) secondary antibodies for 1 h at room temperature. After four wash steps with PBS plus 0.1% Tween 20 (PBST), signals were detected using Western Lightning chemiluminescence reagent or analyzed with the Odyssey infrared imaging system and the software program as specified in the Odyssey software manual.
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7

Western Blot Analysis of Hepatic Proteins

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Whole-cell protein lysates from the liver and KCs were used for western blotting. Electrophoresis was used to separate complex mixtures of proteins on an SDS/PAGE and blotted onto a nitrocellulose membrane. After blocking in 5% BSA, the membranes were then incubated overnight at 4 °C with IRG1 (1:1000, Abcam ab222411), NRF2 (1:1000, cell Cell Signaling Technology 12721) and β-actin (1:1000, Cell Signaling Technology 8457S) as an internal control. Proteins were visualized using IRDye® 800CW goat anti-rabbit 926–32211 (1: 10 000; LI-COR, Lincoln, NE, USA) or anti-mouse 800 antibody (1:10,000, LI-COR, Lincoln, NE, USA) secondary antibodies. Images were captured with the Odyssey CLx system (LI-COR Odyssey CLx, Lincoln, NE, USA). Uncropped scans of all blots are as shown in Source Data Figure. 1.
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8

HSP90 Inhibitor Assay Reagents

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Red protein G affinity beads, RIPA buffer, and protease inhibitor cocktail were purchased from Sigma-Aldrich Corporation (St. Louis, MO). The HSP90 inhibitors, AUY-922 and AT13387, were obtained from Selleck Chemicals (Houston, TX). The BCA Protein Assay Kit was purchased from Pierce Co. (Rockford, IL), and Western blot membranes were purchased from GE Healthcare (Chicago, IL). All antibodies used in Western blots and immunoprecipitation have published immunospecificity data available online. Rabbit anti-AKT, anti-phospho AKT, anti-IKBα, anti-phospho IKBα, anti-STAT3, anti-phospho STAT3, anti-VE-cadherin, anti-occludin, anti-cofilin, and anti-phospho cofilin were purchased from Cell Signaling Technology (Danvers, MA). Mouse monoclonal anti-β-actin and anti-p53 (P8999) were purchased from Sigma-Aldrich Corporation, and secondary IRDye 800CW goat anti-rabbit (926-32211) and IRDye 680RD goat anti-mouse (926-68070) were purchased from LI-COR Biosciences (Lincoln, NE). For SDS-PAGE, Protogel (30% acrylamide mix) and TEMED were purchased from National Diagnostics (Atlanta, GA), Tris-HCl buffer was purchased from Teknova (Hollister, CA), 10% SDS and ammonium persulfate were purchased from Thermo Fisher Scientific, and protein dual-color standards and tricine sample buffer were purchased from Bio-Rad Laboratories.
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9

Western Blot Analysis of Dystrophin and Utrophin

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Cell cultures were seeded into 6 well plates and trypsinized after 7 days of differentiation. Then, cell pellets were solubilized in lysis/loading buffer and denatured at 95 °C for 5 min. Samples were loaded onto a NuPAGE® Novex® 3–8% Tris–Acetate Gel3–8% (Thermo Fisher Scientific) and run in Novex Tris–Acetate SDS Running Buffer (Thermo Fisher Scientific) for 60 min at 70 V + 120 min at 150 V at 4 °C. Protein wet transfer was performed overnight at 4 °C using an Immobilon®-FL PVDF membrane (Merck™). Next day, membranes were stained with Revert ™ 700 Total Protein Stain (Li-Cor) for total protein measurement, blocked with Intercept (PBS) Blocking Buffer (Li-Cor) for 2 h and incubated overnight at 4 °C with the primary antibodies (1/200 anti-dystrophin antibody Abcam15277 or 1/50 anti-utrophin antibody Mancho 7). After washing steps with PBS-Tween 0.1%, membranes were incubated with secondary antibodies for 1 h (1/5000 IRDye 800CW goat anti-rabbit 926-32211 or IRDye 800CW goat anti-mouse 926-32210, Li-Cor) at room temperature, washed again with PBS-Tween 0.1% and scanned using an Odyssey Clx imaging system. Quantification of bands was performed using Image Studio ™ software.
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10

Western Blot Analysis of ACE2 and TMPRSS2

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Western blotting was performed as previously described (Schneider et al. 2017 (link)). Briefly, cells were lysed using Triton-X-100 sample buffer, and proteins were separated by SDS-PAGE. Proteins were blotted on a nitrocellulose membrane (Thermo Scientific). Detection occurred by using specific antibodies against β-actin (1:2500 dilution, Sigma-Aldrich, Munich, Germany), ACE2 and TMPRSS2 (both 1:1000 dilution, abcam, Cambridge, UK) followed by incubation with IRDye-labeled secondary antibodies (LI-COR Biotechnology, IRDye®800CW Goat anti-Rabbit, 926-32211, 1:40 000) according to the manufacturer’s instructions. Protein bands were visualized by laser-induced fluorescence using infrared scanner for protein quantification (Odyssey, Li-Cor Biosciences, Lincoln, NE, USA).
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