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Light cycler thermal cycler system

Manufactured by Bio-Rad
Sourced in United States

The Light Cycler thermal cycler system is a laboratory equipment designed for real-time PCR (Polymerase Chain Reaction) analysis. It provides precise temperature control and rapid thermal cycling capabilities to facilitate the amplification and quantification of nucleic acid sequences.

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8 protocols using light cycler thermal cycler system

1

RNA Extraction and Gene Expression Analysis

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The total RNA was extracted in strict accordance with the instructions of the TRIzol kit reagent (Invitrogen, United States). RNA samples were purified with a genomic DNA eliminator by using the RNeasy Micro Kit (Qiagen, Valencia, CA, United States) and reverse-transcribed into cDNA by using PrimeScript RT Reagent Kit (Invitrogen, United States).
Quantitative RT-qPCR procedure was performed on a LightCycler thermal cycler system (Bio-Rad, United States) using a fluorescent dye (SYBR Green I, Takara) and gene-specific primers according to the following protocol: denaturation at 94°C for 3 min, 40 cycles of 94°C for 5 sec and 34 sec at 60°C. The sequences of gene-specific primers were as shown in Table 2.
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2

Quantifying NRF2 Expression via qRT-PCR

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Total RNA was isolated with a TRIzol reagent according to the manufacturer's instructions (Invitrogen, USA). cDNA is synthesized using the PrimeScript™ RT Reagent Kit (TAKARA, Japan). Real-time polymerase chain reactions were performed with SYBR Green (Roche, Switzerland). The mRNA expression of NRF2 was performed using the LightCycler thermal cycler system (Bio-Rad, U.S.A) for quantitative RT-PCR. All data was normalized to the mRNA expression level of GAPDH. Gene-specific primers were as follows: NRF2: forward, 5′-TAGATGACCATGAGTCGCTTGC-3′, and reverse, 5′-GCCAAACTTGCTCCATGTCC-3′; GAPDH, the forward primer 5′-TCAACAGCAACTCCCACTCTTCCA-3′ and reverse primer 5′-ACCCTGTTGCTGTAGCCGTATTCA-3′.
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3

Transcriptional Analysis of Angiogenic Factors

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Total RNA was isolated using the TRIzol reagent (Invitrogen, USA). RNA samples from each group were reverse transcribed into cDNA using the PrimeScript™ RT reagent Kit (TAKARA, Japan). Quantitative RT-qPCR was performed on a LightCycler thermal cycler system (Bio-Rad, USA) using SYBR® Premix Ex Taq™ II (TAKARA, Japan) and gene-specific primers. Gene-specific primers were as follows: Cav-1: forward, 5′-GACCTAATCCAACCATCAT-3′ and reverse, 5′-AGCAAGAACATTACCTCAA-3′; VEGF: forward, 5′-GACTATTCAGCGGACTCA-3′ and reverse, 5′-AAGAACCAACCTCCTCAA-3′; VEGFR2: forward, 5′-AATGATTGTTGGCGATGAA-3′ and reverse, 5′-GTGAGGATGACCGTGTAG-3′; and β-actin: forward, 5′-ACCTGCCCTTTAGAACTT-3′ and reverse, 5′-GCTCCAGGGACTATCTTT-3′.
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4

Quantitative Analysis of SIRT1 and VEGFA Expression

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Total RNA was isolated using Trizol reagent (Invitrogen, United States). RNA samples from each group were reverse transcribed into cDNA using PrimeScriptTM RT reagent Kit (TAKARA, Japan). Quantitative RT-qPCR was performed on a Light Cycler thermal cycler system (Bio-Rad, United States) using SYBR®Premix Ex TaqTMII (TAKARA, Japan) and gene-specific primers. Gene-specific primers used as followed: SIRT1: forward, 5′- CATACTCGCCACCTAACCTAT -3′ and revised, 5′- AACCTCTGCCTCATCTACATTT -3′, at a fragment length of 93 bp; VEGFA: forward, 5′- CCTCTCCCTACCCCACTTCCT -3′ and revised, 5′- CACTTTCTCTTTTCTCTGCCTCCAT -3′, at a fragment length of 196 bp; β-actin: forward, 5′- CCGTAAAGACCTCTATGCCAACA -3′ and revised, 5′- CTAGGAGCCAGGGCAGTAATCTC -3′, at a fragment length of 102 bp.
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5

Quantifying CXCR4 Expression in BMSCs

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Total RNA of BMSCs transfected with lentiviral was isolated using Trizol reagent (Invitrogen, United States). RNA samples from each group were reverse transcribed into cDNA using the PrimeScript™ RT reagent Kit (TAKARA, Japan). qPCR was performed on a Light Cycler thermal cycler system (Bio-Rad, United States) using SYBR Premix Ex Taq™II (TAKARA, Japan) and gene-specific primers. Gene-specific primers used are as follows: CXCR4—forward 5′-CGCAAATGGGCGGTAGGCGTG-3′ and reverse 5′-CATAGCGTAAAAGGAGCAACA-3′, and GAPDH—forward 5′-CCGCATCT TCTTGTGCAGTG-3′ and reverse 5′-ACCAGC TTCCCATTCTCAGC-3′.
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6

Relative Gene Expression Analysis

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Total RNA was extracted using Trizol reagent (Invitrogen, United States). Then, the RNA of each group was reverse transcribed into cDNA with PrimeScriptTM RT reagent Kit (TAKARA, RR047A, Japan). Quantitative RT-qPCR was performed by a Light Cycler thermal cycler system (Bio-Rad, United States) using iQ SYBR Green Supermix (Bio-Rad, United States). The designed gene-specific primers were as follows: Sirt1: forward, 5′-GAG​TGT​GCT​GGA​GGA​TCT​G -3′, and reverse, 5′- TGC​TCT​GAT​TTG​TCT​GGT​GT-3′; total Mapt: forward, 5′-CCA​GGA​GTT​TGA​CAC​AAT​GGA​AGA​C-3′, and reverse, 5′-CTG​CTT​CTT​CAG​CTT​TTA​AGC​CAT​G-3′; GAPDH: forward, 5′-ATG​GCT​ACA​GCA​ACA​GGG​T-3′, and reverse, 5′-TTA​TGG​GGT​CTG​GGA​TGG-3′.
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7

Quantification of Hippocampal Gene Expression

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Total RNA was isolated from affected hippocampal tissues using Trizol reagent (Invitrogen) before being reverse transcribed into cDNA using Prime Script TM RT reagent Kit (TAKARA). Then RT-qPCR was performed using SYBR R Premix Ex TaqTMII (TAKARA) and gene-specific primers on a Light Cycler thermal cycler system (Bio-Rad). The gene-specific primers were as follows: reelin: forward, 5′-TGGGATAACATGGAAACTCTTGGAG-3′ and revised, 5′-ACCATCTGAACTGGATTCCAAACTG-3; tau: forward, 5′-CCAGGAGTTTGACACAATGGAAGAC-3′ and revised, 5′-CTGCTTCTTCAGCTTTTAAGCCATG-3′; GAPDH: forward, 5′-ATCGCCAGTCCGTCTTCTACATC-3′ and revised, 5’-TGATCGTGGTGACTCCCATCC-3′.
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8

Quantitative Assessment of Cx43 and AQP4 Expression

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Total RNA was extracted by Trizol reagent (Invitrogen, United States). The RNA was then transcripted reversely into complementary deoxyribonucleic acid (cDNA) using a PrimeScriptTM RT reagent Kit (TAKARA, Japan), used as the template for polymerase chain reaction amplification. Quantitative RT-qPCR was conducted on a Light Cycler thermal cycler system (Bio-Rad, United States) using SYBR® Premix Ex TaqTM II (TAKARA, Japan). Gene-specific primers were used as follows: Cx43: The upstream primer: 5′−GGAAAGTACCAAACAGCAGCAG−3′, the downstream primer: 5′−CTGGGCACCTCTCTTTCACTT−3′, the amplified fragment was 152 bp; AQP4: The upstream primer: 5′−CATGGAGGTGGAGGACAACC−3′, the downstream primer: 5′−GCAGGAAATCTGAGGCCAGT−3′, the amplified fragment was 200 bp; GAPDH: The upstream primer: 5′−TGAAGAACAGGGAAGCAGCAA−3′, the downstream primer: 5′−ATCCAGTCCATTTTCCACCACA−3′, the amplified fragment was 200 bp. Amplification system: SYBR® Premix Ex TaqTM II 12.5 μl, Forward Primer (10 μm) 1 μl, Reverse Primer (10 μm) 1 μl, cDNA Template 2 μl, RNase FreedH2O 8.5 μl, and the final volume was 25 μl; amplification conditions: step 1: 95°C for 30 s, 1 cycle; step 2: 95°C for 5 s and 60°C for 30 s, 40 cycles; step 3: 95°C for 15 s, 60°C for 15 s, and 95°C for 15 s.
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