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7 protocols using p chk2

1

Western Blot Analysis of DNA Damage Response

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Protein samples were separated by SDS-PAGE and transferred to PVDF membranes (Millipore, Bedford, UK). Blots were blocked for 1 h in 5% milk/0.1% Tween 20 in phosphate buffered saline (PBS-T) and then incubated with primary antibodies (1: 1000) at 4°C overnight. Blots were then washed three times for 15 min in PBS-T, followed by incubation with secondary antibody (according to different primary antibodies, HRP-conjugated goat anti-mouse, anti-rabbit, and rabbit anti-goat IgG were used (1: 5000, Santa Cruz, Dallas, TX)) in 5% milk/PBS-T for 1 h, and then washed three times for 15 min in PBS-T. The membranes were briefly incubated with ECL detection reagent (Amersham Biosciences, Castle Hill, Australia) to visualize the proteins and were then exposed on X-ray film. Primary antibodies used were as follows: ATM (Cat# 600-401-398), and p-ATM (Cat# 600-401-400) were purchased from Rockland Immunochemical (Gilbertsville, PA, USA); cleavage-caspase-3 (Cat# 9661), cleavage-PARP (Cat# 5625P), γ-H2Ax (Cat# 9718), Bax (Cat# 2772s), and Bcl-2 (Cat# 2870), ATR (Cat# 2790), p-ATR (Cat# 2853S) were from Cell Signaling Technology (Beverly, MA); PARP (Cat# 7150), pro-caspase-3 (Cat# 7272), β-Actin (Cat# 1615), Chk1 (Cat# 377231), p-Chk1 (Cat# 2341), Chk2 (Cat# 8813), p-Chk2 (Cat# 2661) were from Santa Cruz (Dallas, Texas, US).
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2

Antibodies for Western Blotting Analysis

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Antibodies for western blotting were purchased from Cell Signaling (Danvers, MA): p-EGFR (Tyr1068) (2234, 1:1000), EGFR (4267, 1:1000), p-MEK1/2 (Ser217/221) (9154, 1:1000), MEK1/2 (8727, 1:1000), p-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (9101, 1:1000), p44/42 MAPK (Erk1/2) (9102, 1:1000), p-p38 MAPK (Thr180/Tyr182) (9211, 1:1000), p38 MAPK (9212, 1:1000), α-tubulin (2144, 1:2000), vimentin (3390, 1:1000), TACE (3976, 1:1000), Snail (3879, 1:1000), E-cadherin (3195, 1:1000), p-FAK (Tyr397) (3283, 1:1000), FAK (3285, 1:1000), p-STAT3 (Tyr705) (9131, 1:1000), STAT3 (9139, 1:1000), GAPDH (2118, 1:2000), β-actin (3700, 1:2000), p-DNA-PK (68716, 1:1000), DNA-PK (38168, 1:1000), PARP (9532, 1:1000), p-Histone H2A.X (Ser139) (9718, 1:1000), Histone H2A.X (2595, 1:1000), p-Chk2 (Thr68) (2197, 1:1000), Chk2 (2662, 1:1000), p53 (2524, 1:1000), caspase-7 (9492, 1:1000), caspase-3 (14220, 1:1000), AURK-A (14475, 1:1000); Santa Cruz Biotechnology (Dallas, TX): integrin β1/ITGB1 (sc-374429, 1:1000). Selumetinib (AZD6244, MEK1/2 inhibitor), osimertinib (AZD9291, EGFRT790M), M3814 (DNA-PK inhibitor, DNA-PK-I) and ZM-447439 (AURK-A inhibitor, AURK-A-I), MK-4827 (PARP inhibitor, PARP-I), M4076 (ATM inhibitor, ATM-I), M6620 (ATM/ATR inhibitor, benzosertib) and M4344 (ATR inhibitor, ATR-I) were purchased from Selleck Chemicals (Selleckchem).
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3

Cytotoxicity and Cell Signaling Assay

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3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) was purchased from Sigma (Sigma/Aldrich Chemical Company, St. Louis MO, USA). 7-KC was obtained from Cayman (Cayman Chemical Company, Ann Arbor, MI, USA). Cell culture biologicals (Dulbecco's modified Eagle's medium [DMEM], fetal bovine serum [FBS], trypsin/EDTA etc) were obtained from Gibco (Life Technologies, Taipei, Taiwan). Eahy926 (EAHY) endothelial cells were kindly given by Professor Cora-Jean S. Edgell (North Carolina University, NC, USA) [32 ] and studied in my laboratory before [33 , 34 (link)]. EAHY cells are hybrid cells from human umbilical vein endothelial cells and have the differentiation function of endothelium and express factor VIII-related antigens [32 ]. They were cultured in DMEM containing 10% FBS. Enzyme-linked immunosorbant assay (ELISA) kits for IL-8 were obtained from PeproTech (PeproTech Company, Rocky Hill, NJ, USA). Antibodies against Cdk1, cyclin B1, p-ATM, p-ATR, p-Chk1, p-Chk2, p-p53, p-Akt and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were from Santa Cruz (Santa Cruz Biotechnology Inc., Dallas, Texas, USA).
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4

Evaluating Cellular Oxidative Stress Response

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CQ, dimethylsulfoxide (DMSO), 3-(4,5-dimethyl-thiazol-2-yl)-2,5-diphenyl-tetrazolium bromide (MTT), 2’,7’-dichlorodihydrofluorescein diacetate (DCFH-DA), propidium iodide (PI), N-acetylcysteine (NAC), catalase, superoxide dismutase (SOD) and Zinc protoporphyrin (ZnPP) were obtained from Sigma (Sigma Chemical Company, St Louis, MO, USA). The cell culture biological such as Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), penicillin and streptomycin were bought from Gibco (Life Technologies, Grand Island, NY, USA). Annexin V and reagents for flow cytometry were obtained from Becton Dickinson (Worldwide Inc., San-Jose, CA). RNA isolation kit and NucleoSpin RNA II were puchased from Macherey-Nagel (Macherey-Nagel Inc, Easton, PA, USA). The SuperScriptTM III First-Strain DNA Synthesis System for reverse transcriptase-polymerase chain reaction (RT-PCR) was from Invitrogen (Invitrogen Corporation, Carlsbad, CA, USA). The luminol reagents for western blotting and the primary antibodies Type I collagen, p-ERK, GAPDH, COX-2, HO-1, cdc2, cyclin B1, cdc25C, p-ATM, p-Chk2, p-p53, GADD45α were obtained from Santa Cruz Biotechnology (Santa Cruz Biotechnology Inc., Santa Cruz, CA, USA), and p21 was from GeneTex (Irvine, California, USA). Enzyme-linked immunosorbant assay (ELISA) kits for PGE2 and 8-isoprostane were from Cayman Chemical Company (Ann Arbor, MI, USA).
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5

Comprehensive Cell Signaling Pathway Analysis

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The reagents used in this study were as follows: liposomes were purchased from Invitrogen (Carlsbad, CA, USA); glycine, lauryl sodium sulfate, tetramethylethylenediamine, TRIzol, and tris(hydroxymethyl)aminomethane were purchased from Amresco (Solon, OH, USA); acrylic amide was purchased from Merck (Darmstadt, Germany); bovine serum albumin (BSA) was purchased from Roche (Basel, Switzerland); fluorescent protein solutions were purchased from Pierce (Rockford, IL, USA); ammonium peroxydisulfate, dimethyl sulfoxide (DMSO), N, N’-methylenebisacrylamide, and puromycin were purchased from Sigma (St. Louis, MO, USA); trypsin, Dulbecco’s modified Eagle’s medium (DMEM) with high glucose, and fetal bovine serum were purchased from HyClone (Logan, UT, USA); PrimeSTAR DNA polymerase and T4 DNA ligase were purchased from TaKaRa (Tokyo, Japan); GAPDH, P62, CHK1, CHK2, MYTl, WEEl, CDC25, CDC25C, ATM, CDK1, LC3, p68-CHK1, p216-CDC25C, p15-CDK1, p1981-ATM, SQSTM1/P62, pCHK2, pCHK1, CDC, pCDC25C, and MPM2 antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), Cell Signaling Technology (Danvers, MA, USA), or Millipore/Upstate(NY, USA); and the pLKO.1 plasmid was purchased from Sigma (Darmstadt, Germany).
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6

Immunofluorescence Staining of Cellular Markers

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Cells were seeded in 24-well plates, treated, washed with PBS containing 0.25% TritonX-100, fixed with 4% paraformaldehyde at 4°C for 20 min followed by ice-cold 75% ethanol for 5 min, and then maintained in blocking buffer (PBS containing 0.25% TritonX-100 and 2% BSA). Next, cells were incubated overnight at 4°C with primary antibodies targeting h-DAXX (1:150 dilution), PML (1:50 dilution; Santa Cruz), or γ-H2AX/phosphorylated CHK2 (p-CHK2, 1:200 dilution). After washing with PBS-T, cells were incubated with secondary antibodies (antigoat Alexa 488-conjugated antibodies or antirabbit Alexa 546-conjugated antibodies; 1:200 dilution; Santa Cruz) for 1 h at room temperature. Nuclei were counterstained with Hoechst (1:100 dilution) for 2 min at room temperature. Slides were analyzed immediately with a fluorescence microscope (Nikon).
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7

DNA Damage Response Signaling Pathway

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Cells were lysed with RIPA lysis buffer containing protease inhibitors (Thermo Scientific, US) at 4 °C for at least 30 min. Protein concentration was measured using BCA protein assay kit (Thermo Scientific, US). Then, equal amount of proteins was separated by 8-12% SDS-PAGE, transferred to a polyvinylidene fluoride (PVDF) membrane (Milliopre, US), and probed with the indicated antibodies, followed by ECL detection. Antibodies against pATR, pCHK1, pATM, pCHK2, γH2AX and Parp1 were purchased from Santa Cruz Biotechnology, US; antibodies against Caspase 3, cleaved caspase 3 were from Cell Signaling Technology, US; anti-c-Myc and anti-Mxd1 were purchased from Abcam, US.
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