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8 protocols using e cadherin sc 7870

1

Investigating Signaling Pathways in Cell Adhesion

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ATP, BzATP, KN62, LY294002, U0126 and Digitonin were obtained from Sigma (St Louis, MO, USA). Rabbit anti-P2X7 antibody (#APR-008) was obtained from Alomone Labs (Jerusalem, Israel), and antibodies of β-actin (#TA-09), ERK1/2(#SC-94) and E-cadherin (#SC-7870) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies of Snail (#3895S), Claudin-1 (#4933P), p-AKT (#4056S), AKT (#4691S), and p-ERK1/2 (#9101S) were purchased from Cell Signaling Technology (Danvers, MA, USA). HRP-conjugated goat anti-mouse (#ZB-2305) and goat anti-rabbit IgG (#ZB-2301) were obtained from OriGene (Maryland, USA). Fluo-4AM (#F14201) was obtained from Molecular Probes (Eugene, OR, USA). HBSS (#14025092) was purchased from Invitrogen (Carlsbad, CA, USA).
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2

Immunofluorescence Antibody Reagents

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Antibodies against HSP90 (4877), clathrin heavy chain (4796), calnexin (2679) and cleaved caspase-3 (9661) were purchased from Cell Signaling Technology, MA, USA. Antibodies against HSP90 (sc-1055 and sc-1057) and E-cadherin (sc-7870) were purchased from Santa Cruz Biotechnology, TX, USA. Antibodies against CD31 (553370) and CD44-FITC (555478) were purchased from BD Biosciences, CA, USA. Alexa Fluor® 488 anti-mouse (A11001), Alexa Fluor® 594 anti-mouse (A11005), Alexa Fluor® 594 anti-rabbit (A11012) and Alexa Fluor® 594 anti-rat (A21209) antibodies were purchased from Life technologies, NY, USA.
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3

Isolation and Characterization of PS-T

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Huaier crude extract was obtained from Qidong Gaitianli Pharmaceutical Co., Ltd. (Qidong, China). Polysaccharides of TrametesrobiniophilaMurr (PS-T) were isolated and purified as previously reported by our team [41 (link)]. The purity of the PS-T was over 99%, which was evaluated using a phenol–sulfuric acid method with glucose as the standard [42 (link)]. Primary antibodies against MAP1LC3B (NB100-2220), Snail (NBP2-50300) were purchased from Novus Biologicals. E-cadherin (Ab40772), Cytokeratin (Ab7753), Vimentin (Ab8978) and ATG12 Antibody (ab155589) were from Abcam. ATG5 Antibody (PA5-23186) were from Thermo Fisher. N-cadherin (AF4039), Fibronectin (AF5335), Occluding (AF7504), P62 (AF5128), Beclin-1 (AF5128) and β-actin (AF7018) was purchased from Affinity. SNAI1 (SC-271977), and E-cadherin (SC-7870) were from Santa Cruz Biotechnology. Secondary antibodies against rabbit IgG (7074) were from Cell Signaling Technology. Secondary antibodies for immunocytochemistry (FITC and Cy3) were purchased from EarthOx. Other materials were obtained from commercially available chemicals.
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4

Western Blot Analysis of Protein Markers

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Whole-cell lysates were prepared as previously described [14 (link),28 (link)]. The protein samples (20–30 µg) were analyzed by Western blot, which was also described previously [14 (link)]. Antibodies, which included CD206 (sc-58986), Cyclin D1 (sc-450), and E-Cadherin (sc-7870) from Santa Cruz Biotechnology, were utilized according to the manufacturers’ manuals include and used at a 1:200 dilution. Anti-inducible nitric oxide synthase (iNOS/NOS Type II, #610333) was obtained from BD Biosciences and used at a 1:1000 dilution. Anti-phosphorylated STAT3 (Tyr705, #9131), total STAT3 (#4904), vimentin (#5741), and GAPDH (#2118), were all obtained from Cell Signaling and used at a 1:1000 dilution. Band intensities were quantified by using NIH IMAGE software (ImageJ 1.50i; NIH, Bethesda, MD, USA).
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5

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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Total lysates from cells under the different experimental conditions were separated on 7.5% polyacrylamide denaturing gels and blotted onto nitrocellulose membranes (GE Healthcare Life Science, Little Chalfont, United Kingdom), which were reacted with antibodies directed against E-cadherin (sc-7870), Vimentin (sc-373717), and β-Catenin (sc-7963) from Santa Cruz Biotechnology (Santa Cruz, CA, USA); against Akt2 (#3063), p-Akt2 (Ser474, #8599), p-GSK-3β (Ser9, #5558), GSK-3β (#9315), p-p70 S6 Kinase (Thr389, #9205), and p70 S6 Kinase (#9202) from Cell Signaling Technology (Danvers, MA, USA); and against Akt1 (#610860, BD Biosciences), anti-p-Akt1 (Ser473, #05-739), and anti-β-Tubulin (#T4026), following previously reported procedures [27 (link)]. The immunocomplexes were detected by using a WESTAR NOVA 2.0 (Cyanagen, Bologna, Italy), and the chemiluminescence-derived bands were captured with an ImageQuantTM LAS 4000 imager (GE Healthcare Life Science) and quantified with Image Quant TL software v7.0 (GE Healthcare Life Science), as previously reported [27 (link)].
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6

Immunohistochemistry Staining and Evaluation

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Immunohistochemistry staining was performed by the Labeled Streptavidin Biotin method with a heat-induced antigen retrieval step. Sections from the tissue array were immersed in boiling 10 mM sodium citrate at pH6.0 for 3 minutes in a pressure cooker in order to revive the antigens. The antibod-ies used in the study are as followed: Wnt-1, RB-9264-P, Lab Vision, working concentration 1:100. WIF-1, sc-25520, Santa Cruz, 1:200. beta-Catenin, sc-7199, Santa Cruz, 1:200. E-Cadherin, sc-7870, Santa Cruz, 1:200.
Two pathologists simultaneously evaluated the immunohistochemical staining. The percentage of the cell with cytoplasmic staining was scored for Wnt-1, WIF-1, and beta-Catenin. The percentage of stained nuclei, independent of the intensity, was scored for beta-Catenin. Three categories for semiquantification analysis were defined for Wnt-1, WIF-1 and beta-catenin: 0 (negative and less 5% positive staining), 1 (between 5% and 50% positive staining), and 2 (more than 50% positive staining). For the beta-catenin translocated in cell nuclei, the following categories were defined: 0 (0-5%), 1 (6-25%), and 2 (more than 25% of stained nuclei).
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7

Rat Autopsy and Mesothelioma Diagnosis

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At autopsy, rats were macroscopically examined throughout the body, including celomic cavities. All major organs, including the diaphragm with the attached mesenteriolum, were resected, fixed in 10% neutrally buffered formalin and processed routinely to prepare paraffin-embedded sections. Mesothelioma was diagnosed in combination of histological and the following immunohistochemical assessments.
For the immunohistochemical studies, primary antibodies used were C-ERC Mesothelin (No.28001, Immuno-Biological Laboratories Co. Ltd., Fujioka-shi, Gunma, Japan, 1:100) as a marker for mesothelial cells, E-cadherin (sc-7870, Santa Cruz Biotechnology, Dallas, TX, USA, 1:300) as a marker for epithelial cells, Vimentin (N1521, DAKO, Glostrup, Denmark, 1:100) as a marker for mesenchymal cells and CDKN2A/P16INK4A (CDK-N2A, ab-54210, Abcam plc, Cambridge, UK, 1:100) as a marker for genomic alteration of the tumors. To enhance the immunostaining for antibodies, deparaffinized sections were placed in a thermoresistant beaker filled with a citrate buffer, pH 6.0, or Tris-EDTA buffer, pH 9.0, and a heat epitope retrieval procedure was performed using a microwave oven (500 W). The immunoperoxidase staining was done using the Envision (K1491, DAKO) as a secondary antibody and visualized with 3,3'-diaminobenzidine (K3486, DAKO), while nuclei were lightly counterstained with hematoxylin.
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8

Immunofluorescence Staining of Cells and Embryos

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Embryos or cells were fixed in 4% paraformaldehyde for 30 minutes at room temperature. The embryos or cells were subsequently permeabilized in 0.5% Triton X-100 in phosphate-buffered saline overnight at 4 C or for 30 minutes at room temperature. After being blocked with 5% bovine serum albumin (Sigma-Aldrich) in phosphate-buffered saline for 1 hour, the embryos or cells were incubated in primary antibody (diluted 1:100) against PLAC8 (A62753, Sigma-Aldrich), E-cadherin (sc-7870; Santa Cruz Biotechnology), B23 (32-5200; Invitrogen), and vimentin (ZA-0051; Zhongshan Golden Bridge) overnight at 4 C, followed by antirabbit Alexa Fluor 555 (Invitrogen) or anti-mouse Alexa Fluor 488 (Invitrogen) secondary antibody (diluted 1:100) for 1 hour at room temperature. The nuclei were labeled with 4,6-diamidino-2-phenylindole (DAPI, diluted 1:500; Sigma-Aldrich) for 15 minutes. The negative control embryos were incubated with the secondary antibody alone. No fluorescence signals were detected in the controls. LoVo cells served as positive controls. Laser scanning microscopy was performed using a Zeiss LSM 780 confocal microscope (Carl Zeiss) with a Â10 or Â20 objective lens. Image analysis was conducted using Zeiss LSM Image Browser software.
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