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Ds 11 microvolume spectrophotometer

Manufactured by DeNovix
Sourced in United States

The DS-11 microvolume spectrophotometer is a compact and versatile instrument designed for the measurement of DNA, RNA, and protein concentrations in small sample volumes. It utilizes a patented cuvette-free technology to analyze samples as small as 0.5 μL, making it suitable for a wide range of applications in molecular biology and life science research.

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4 protocols using ds 11 microvolume spectrophotometer

1

Validation of X. euroxanthea Markers

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The bacterial strains used for the validation of the eight X. euroxanthea-specific markers are listed in Table 2 and include seven X. euroxanthea strains; and other closely related and niche-sharing strains, namely 10 strains of X. arboricola, seven strains representing six pathovars of X. arboricola and 11 strains belonging to non-arboricola Xanthomonas species. Bacterial strains were cultured as previously described [14 (link)] or in peptone-sucrose-agar (PSA) medium (10 g peptone; 10 g sucrose; 1 g glutamic acid; 15 g agar and distilled water up to 1.0 L) at 28 °C. DNA was extracted from pure cultures using the EZNA Bacterial DNA Purification kit (Omega Bio-Tek, Norcross, GA, USA), according to the manufacturer’s instructions and quantified using a DS-11 microvolume spectrophotometer (DeNovix, Wilmington, DE, USA).
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2

Purification and Characterization of MgtE

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The wild type MgtE was expressed in 1 L cultures and induced at 37 °C, 30 °C and 20 °C, respectively. The harvested cells were disrupted and the membrane fraction was solubilized using different detergents as described above. The supernatant containing the detergent-solubilized membrane was incubated with Ni2+ resin for 15 min. followed by passing it through a column. The resin was washed with 20 mM HEPES, 150 mM NaCl, 1 mM DDM, 50 mM imidazole, pH 7.0 buffer and MgtE was eluted with buffer containing 300 mM imidazole and 1 mM DDM. The eluate was then concentrated in Amicon Ultra 30K filter (Merck Millipore). To analyze whether the channel is properly folded, the purified protein was applied onto a Superdex 75 10/300 column (GE Healthcare) size-exclusion column equilibrated with 20 mM HEPES, 150 mM NaCl, 1 mM DDM, pH 7.0 buffer. The main peak of the gel filtration profiles was collected to measure the concentration of the purified MgtE (normalized to per litre of culture) using the molecular weight (~50 KDa) and molar extinction coefficient (53860 M-1cm-1) of wild-type MgtE in a DS-11+ microvolume spectrophotometer (DeNovix).
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3

RNA Isolation and Reverse Transcription

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We used the miRNeasy RNA isolation kit (Cat no. 74104; Qiagen, Valencia, CA, USA) to extract total RNA from the PBMCs following the manufacturer’s instructions. We assessed the RNA concentration and integrity using a DeNovix DS-11 micro-volume spectrophotometer (Wilmington, NC, USA). Then, total extracted RNA were reverse transcribed into cDNA using the RT2 first strand kit (Cat no. 330401; Qiagen, Valencia, CA, USA) for the target mRNAs, and miScript II RT Kit (Cat no. 218161; Qiagen, Valencia, CA, USA) for the non-coding RNAs, as per the manufacturer’s protocol using Thermo Hybaid PCR express (Thermo Scientific, Waltham, MA, USA).
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4

Arabidopsis T-DNA RNA Isolation

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To extract RNA from the Arabidopsis T-DNA lines, the Total RNA Isolation kit (NZYTech, Lisboa, Portugal) was used. The manufacturer protocol was used; however, the mass of plant tissue used was 150 mg and had previously been frozen in liquid nitrogen, and the elution volume was down to 20 µL. After the extraction, the RNA was quantified in a DS-11 microvolume Spectrophotometer (Denovix, Wilmington, NC, USA) and stored at −80 °C.
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