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12 protocols using tissue tek oct compound medium

1

Brain Tissue Preparation for Amyloid-Beta Study

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Brain samples from the control, Aβ1–42 and NAM + Aβ1–42 treated animals (n = 6 mice/group) were examined. Transcardial perfusion of mice with paraformaldehyde (4% ice-cold) was performed. Brains were kept overnight in 4% paraformaldehyde, transferred to 20% sucrose for 72 h, and frozen in an optimal cutting temperature (OCT) compound (Tissue-Tek O.C.T compound medium, Sakura Finetek USA, Inc., Torrance, CA, USA). Then, 14 μm coronal flat sections were cut using a CM 3050C cryostat (Leica Biosystems, Wetzlar, Germany). These sections were then thaw-mounted on a probe-on plus-charged slide (Thermo Fisher Scientific Inc., Waltham, MA, USA).
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2

Rat Brain Sectioning and Analysis

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Brain sections from saline-, glutamate- or glutamate-plus-osmotin-treated rat pups (n=5 rats per group) were analyzed after 12 h of drug treatment. Transcardial perfusion was performed with 1X phosphate-buffered saline (PBS) followed by 4% ice-cold paraformaldehyde. The brain tissues were post-fixed overnight in 4% paraformaldehyde and subsequently transferred to 20% sucrose until they sank to the bottom of the tube. The brains were frozen in OCT (Tissue-Tek O.C.T. compound medium, Sakura Finetek USA, Inc., Torrance, CA, USA) and then sectioned into 14 μm sections in the coronal plane with a CM 3050S cryostat (Leica, Wetzlar, Germany). The sections were thaw-mounted on Probe-On positively charged slides (Thermo Fisher Scientific Inc., Waltham, MA, USA).
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3

Immunohistochemistry of Lumbar Spinal Cord

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Immunohistochemical analyses were performed as described elsewhere (Yamashita et al. 2007; Watanabe et al. 2014b). In brief, mice at the disease end‐stage were deeply anesthetized with pentobarbital, and sequentially perfused transcardially with PBS and 4%(w/v) paraformaldehyde in 0.1 M phosphate buffer for 10 min. After the incubation with 30%(w/v) sucrose in PBS, the dissected lumbar spinal cords were embedded in Tissue‐Tek OCT compound medium (Sakura Finetek, Tokyo, Japan), and froZen at −80°C until use. After blocking, the 12 μm‐sliced lumbar spinal cord sections were incubated with the primary antibodies for overnight at 4°C. Bound antibodies were detected with Alexa Fluor 488/564‐conjugated secondary antibodies (1 : 500, Thermo Fisher Scientific Inc., Waltham, MA, USA). Immunostained images were obtained by confocal laser scanning microscopy (LSM700; Carl Zeiss AG, Oberkochen, Germany) and the equipped software (Zen; Carl Zeiss, AG, USA).
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4

Laser Capture Microdissection of Tumor Tissues

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After resection, cancer tissues were immediately embedded in Tissue-Tek OCT compound medium (Sakura Finetek Japan, Tokyo, Japan). Serial frozen sections of 9-mm in thickness were mounted onto a 90 FOIL-SL25 foil-coated glass slide (Leica Microsystems, Wetzlar, Germany). Laser capture microdissection (LCM) was performed using an Application Solutions LCM System (Leica Microsystems). Tumor DNA was extracted and purified using a QIAamp DNA micro kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions. Non-neoplastic tissues were homogenized in microtubes, and DNA was extracted and purified from these tissues using a QIAamp DNA mini kit (Qiagen) according to the manufacturer's instructions.
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5

Perfusion-Based Brain Tissue Preparation

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After completion of behavioral studies, For morphological/immunofluorescence analysis, the experimental mice/animals (n = 8) were brought into the surgical room and anesthetized with Rompun (Xylazine; 0.05 mL/100 g body weight) and Zoletil (ketamine; 0.1 mL/100 g body weight) as described previously [6 (link)]. These mice were perfused transcardially with normal saline solution (0.9%) followed by paraformaldehyde (4%). The mice brain tissue was removed immediately and fixed at 4 °C for 72 h with ice-cold paraformaldehyde. After this, they were submerged for 72 h in sucrose phosphate buffer (20%). All mice’s brains were frozen in optimum cutting temperature (O.C.T) compound (tissue-Tek O.C.T compound medium, Sakura Finetek USA, Inc., Torrance, CA, USA) and further cut into coronal sections of 14 μm using a CM3050C cryostat (Leica, Nussloch, Germany).
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6

Fixing and Sectioning Mouse Brains

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The mice were perfused transcardially with saline followed by transfusion with ice-cold 4% neutral buffer paraformaldehyde. The brains were fixed in 4% paraformaldehyde for 72 h, followed by incubation in 20% sucrose for 48 h. After that, the brains were fixed in the frozen O.C.T. compound (Tissue-Tek O.C.T. compound medium, Sakura Finetek United States, Inc., Torrance, CA, United States). The 14 μm coronal plane sections were cut using a CM 3050 S Cryostat (Leica, Berlin Germany). The sections were taken on the gelatin-coated slide and used for further experiments.
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7

Immunohistochemical Analysis of Mouse Brains

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For immunofluorescence and histological analysis, as described previously in Reference [40 (link),41 (link)], the mice were transcardially perfused with saline, followed by fixation with 4% ice-cold paraformaldehyde, and the brains were fixed for 72 h, in paraformaldehyde, and then transferred to 20% sucrose, for 72 h. The O.C.T compound (tissue-Tek O.C.T compound medium, Sakura Finetek USA, Inc., Torrance, CA, USA) was used for freezing and blocking the brain, and 14 μm coronal sections were cut, using a CM 3050C cryostat (Leica, Nussloch, Germany). The brain section was taken on a probe-on plus charged slides (Fisher, Rock-ford, IL, USA).
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8

Wire-Induced Femoral Artery Injury Model

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Wire-induced injury of the femoral artery was performed at day 7 of empagliflozin treatment as previously described (19 (link)). In brief, mice were anesthetized as described earlier. A straight spring wire (0.38 mm in diameter, Cook Medical, Bloomington, IN, United States) was then inserted through the profunda femoris artery up to 1 cm into the femoral artery and left in place for 1 min to achieve an adequate wire-induced vessel injury. After removal of the wire, the profunda femoris artery was ligated (7-0 Prolene, Ethicon, Johnson & Johnson, Norderstedt, Germany) and perfusion of the dilated femoral artery was re-established. Mice were sacrificed at 10 or 21 days by cervical dislocation. The femoral artery was carefully harvested and embedded in Tissue-Tek OCT compound medium (Sakura Finetek Europe B.V., Staufen im Breisgau, Germany). Then, the arteries were snap-frozen and stored at –80°C until sectioning.
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9

Morphological Brain Tissue Analysis

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The animals were euthanized after 12 h of drug treatment to conduct morphological studies as we reported earlier [26 (link)]. Briefly, the brain tissues from all the treated groups after 12 h were subjected to transcardial perfusion with 4 % ice-cold paraformaldehyde. After postfixing these brain tissues, 4 % paraformaldehyde was transferred to 20 % sucrose. The tissues were frozen in OCT (Tissue-Tek O.C.T. Compound Medium, Sakura Finetek USA, Inc., Torrance, CA, USA), sectioned into 14–16-μm sections in the coronal plane with a CM 3050S cryostat (Leica, Wetzlar, Germany). The sections were thaw-mounted on Probe-On positively charged slides (Thermo Fisher Scientific Inc., Waltham, MA, USA).
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10

Brain Tissue Extraction and Preservation

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After cognition assessments, the mice were anesthetized with Rompun (M&S Korea) mixed with Zoletil (M&S Korea) (1:2) (administered; 0.5 mL per 100 g of body weight). For biochemical analysis, the brains were immediately removed, and the hippocampi and cortices regions were dissected out carefully and flash-frozen with liquid nitrogen. For protein extraction, the tissues were mechanically homogenized in PRO-PEP extraction solution on the surface of the ice and centrifuged at 13,000 rpm for 30 min at 4 °C. The supernatants were collected and analyzed by SDS-PAGE. For immunostaining and morphological analysis, the animals were perfused transcardially with normal saline and then, subsequently, with 4% paraformaldehyde (PFA). The brains were removed cautiously, submerged, and fixed at 4 °C in ice-cold PFA for 72 h and were then rinsed with filter-Phosphate-buffered saline (f-PBS) and placed in 20% sucrose solution for 48 h before freezing in OCT compound (Tissue-Tek O.C.T compound medium, Sakura Finetek USA, Inc., Torrance, CA, USA #4583). Serial 14 μm coronal tissue sections were cut on CM 3050C cryostat (Leica, Nussloch, Germany) microtome and thaw-mounted on gelatin-coated slides.
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